Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01421 ATGGGTTGTTTTCCTTGTTTCGATTCGAGGGAGGAGGAGAAGCTAAATCCTGAAAGGGAAAGCGATGATGGTCAGCAAGACCATCCAATGGTTCCACCGAACATTGCAAAATTACCTTCTGGCACAGACAAACTTGGGTCCAAAAGTAATGGAGGTTCCAAAAGGGAACAGCAGATTCCCAAGGATGCTCCTCTTGTCAATATTTCTGCTCAAACATTCACTTTCCGGGAACTTGCTATTGCGACAAAGAACTTTAGACCCGAATGTTTTATTGGGGAAGGAGGATTTGGACGTGTATACAAAGGGCGGCTCGAAAGCACAGGCCAGATTGTTGCTGTTAAACAGTTGGATAGGAATGGTCTTCAAGGCAACAGAGAATTTCTAGTGGAGGTTCTCATGCTTAGTCTTCTACATCATCCAAATTTGGTGAATCTGATTGGTTACTGTGCTGATGGGGATCAACGGCTTCTTGTGTATGAGTTCATGCCTTTGGGATCATTGGAAGATCATCTTCACGAAATTCCACCTGATAAGGAACCCCTTGATTGGAACACAAGAATGAAAATAGCTGCTGGTGCAGCCCGAGGTTTAGAGTACTTGCATGACAAGGCAAACCCTCCAGTTATTTATAGAGACTTCAAATCCTCCAATATATTACTTGAGGAAGGATACCATCCAAAGCTTTCTGATTTTGGCCTCGCCAAGCTTGGCCCTGTTGGAGATAAATCTCATGTTTCCACCAGGGTCATGGGGACTTATGGTTACTGTGCTCCTGAGTACGCCATGACTGGACAATTAACCGTCAAGTCTGATGTTTATAGTTTTGGTGTTGTCTTCTTAGAGTTGATTACTGGACGGAGAGCCATTGATAGCACCCGACCCCAAGGTGAACAGAACCTTGTCACATGGGCACGCCCGTTTTTTAACGATCGCCGAAGATTCTCAAAACTGGCTGATCCACAGTTGCAGGGGCGGTATCCCATGCGAGGTCTCTACCAGGCTTTAGCTGTGGCATCCATGTGTACCCAAGAACAGGCTGCAGCTCGTCCACTCATTGGAGACGTGGTCACTGCCCTGTCTTATTTAGCAAATCAGTCCTATGATCCAAGTTCTCCTTCAGGTACTGCTGCCGCTCAGAGAGGTTCTGGTGACCGGGACGAAAGACAGAACAGTGGCGAGAAAGGTGGAGGGGTGGTAAAGAATGAAGAAGGGGGAGCATCTGGACGAAGGTGGACACTGGATGGTCCGGAGAAGGACGACTCCCCTAGGGAGACTGCAAGGATTTTGAATAGGGATTTAGACAGAGAGCGTGCGGTCGCTGAGGCGAAGATGTGGGGAGAGAATTGGCGAGAAAAAAGACGACAGAGCACGCAAGGCAGTTTTGATGGGTCTAATGGATAA 1401 47.39 MGCFPCFDSREEEKLNPERESDDGQQDHPMVPPNIAKLPSGTDKLGSKSNGGSKREQQIPKDAPLVNISAQTFTFRELAIATKNFRPECFIGEGGFGRVYKGRLESTGQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHEIPPDKEPLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDFKSSNILLEEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRRAIDSTRPQGEQNLVTWARPFFNDRRRFSKLADPQLQGRYPMRGLYQALAVASMCTQEQAAARPLIGDVVTALSYLANQSYDPSSPSGTAAAQRGSGDRDERQNSGEKGGGVVKNEEGGASGRRWTLDGPEKDDSPRETARILNRDLDRERAVAEAKMWGENWREKRRQSTQGSFDGSNG 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9377727 9381873 - CmaCh17G014210.1 Cma17g01421 313316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01421 466 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Cma17g01421 466 MobiDBLite consensus disorder prediction 412 457 - -
Cma17g01421 466 SUPERFAMILY Protein kinase-like (PK-like) 66 359 IPR011009 -
Cma17g01421 466 Pfam Protein kinase domain 90 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g01421 466 MobiDBLite consensus disorder prediction 7 26 - -
Cma17g01421 466 ProSiteProfiles Protein kinase domain profile. 85 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g01421 466 Gene3D Transferase(Phosphotransferase) domain 1 162 375 - -
Cma17g01421 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Cma17g01421 466 PANTHER OS07G0668900 PROTEIN 1 461 - -
Cma17g01421 466 CDD STKc_IRAK 91 359 - -
Cma17g01421 466 Gene3D Phosphorylase Kinase; domain 1 47 161 - -
Cma17g01421 466 PANTHER SERINE/THREONINE-PROTEIN KINASE PBS1 1 461 - -
Cma17g01421 466 MobiDBLite consensus disorder prediction 366 466 - -
Cma17g01421 466 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01475 Cma-Chr6:9381522 Cma17g01421 Cma-Chr17:9377727 0 dispersed
Cma14g01637 Cma-Chr14:12259054 Cma17g01421 Cma-Chr17:9377727 0 dispersed
Cma19g00126 Cma-Chr19:744556 Cma17g01421 Cma-Chr17:9377727 1.22E-102 dispersed
Cma04g00953 Cma-Chr4:4887290 Cma17g01421 Cma-Chr17:9377727 5.41E-180 transposed
Cma14g01086 Cma-Chr14:7401524 Cma17g01421 Cma-Chr17:9377727 1.27E-92 transposed
Cma16g00856 Cma-Chr16:5061478 Cma17g01421 Cma-Chr17:9377727 1.90E-160 transposed
Cma01g00948 Cma-Chr1:6020324 Cma17g01421 Cma-Chr17:9377727 2.38E-147 transposed
Cma17g01421 Cma-Chr17:9377727 Cma08g00010 Cma-Chr8:56342 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69259 PF00069 Pkinase 4.40E-45 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01421 K13430 - csv:101219880 899.042