Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g01421 | ATGGGTTGTTTTCCTTGTTTCGATTCGAGGGAGGAGGAGAAGCTAAATCCTGAAAGGGAAAGCGATGATGGTCAGCAAGACCATCCAATGGTTCCACCGAACATTGCAAAATTACCTTCTGGCACAGACAAACTTGGGTCCAAAAGTAATGGAGGTTCCAAAAGGGAACAGCAGATTCCCAAGGATGCTCCTCTTGTCAATATTTCTGCTCAAACATTCACTTTCCGGGAACTTGCTATTGCGACAAAGAACTTTAGACCCGAATGTTTTATTGGGGAAGGAGGATTTGGACGTGTATACAAAGGGCGGCTCGAAAGCACAGGCCAGATTGTTGCTGTTAAACAGTTGGATAGGAATGGTCTTCAAGGCAACAGAGAATTTCTAGTGGAGGTTCTCATGCTTAGTCTTCTACATCATCCAAATTTGGTGAATCTGATTGGTTACTGTGCTGATGGGGATCAACGGCTTCTTGTGTATGAGTTCATGCCTTTGGGATCATTGGAAGATCATCTTCACGAAATTCCACCTGATAAGGAACCCCTTGATTGGAACACAAGAATGAAAATAGCTGCTGGTGCAGCCCGAGGTTTAGAGTACTTGCATGACAAGGCAAACCCTCCAGTTATTTATAGAGACTTCAAATCCTCCAATATATTACTTGAGGAAGGATACCATCCAAAGCTTTCTGATTTTGGCCTCGCCAAGCTTGGCCCTGTTGGAGATAAATCTCATGTTTCCACCAGGGTCATGGGGACTTATGGTTACTGTGCTCCTGAGTACGCCATGACTGGACAATTAACCGTCAAGTCTGATGTTTATAGTTTTGGTGTTGTCTTCTTAGAGTTGATTACTGGACGGAGAGCCATTGATAGCACCCGACCCCAAGGTGAACAGAACCTTGTCACATGGGCACGCCCGTTTTTTAACGATCGCCGAAGATTCTCAAAACTGGCTGATCCACAGTTGCAGGGGCGGTATCCCATGCGAGGTCTCTACCAGGCTTTAGCTGTGGCATCCATGTGTACCCAAGAACAGGCTGCAGCTCGTCCACTCATTGGAGACGTGGTCACTGCCCTGTCTTATTTAGCAAATCAGTCCTATGATCCAAGTTCTCCTTCAGGTACTGCTGCCGCTCAGAGAGGTTCTGGTGACCGGGACGAAAGACAGAACAGTGGCGAGAAAGGTGGAGGGGTGGTAAAGAATGAAGAAGGGGGAGCATCTGGACGAAGGTGGACACTGGATGGTCCGGAGAAGGACGACTCCCCTAGGGAGACTGCAAGGATTTTGAATAGGGATTTAGACAGAGAGCGTGCGGTCGCTGAGGCGAAGATGTGGGGAGAGAATTGGCGAGAAAAAAGACGACAGAGCACGCAAGGCAGTTTTGATGGGTCTAATGGATAA | 1401 | 47.39 | MGCFPCFDSREEEKLNPERESDDGQQDHPMVPPNIAKLPSGTDKLGSKSNGGSKREQQIPKDAPLVNISAQTFTFRELAIATKNFRPECFIGEGGFGRVYKGRLESTGQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHEIPPDKEPLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDFKSSNILLEEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRRAIDSTRPQGEQNLVTWARPFFNDRRRFSKLADPQLQGRYPMRGLYQALAVASMCTQEQAAARPLIGDVVTALSYLANQSYDPSSPSGTAAAQRGSGDRDERQNSGEKGGGVVKNEEGGASGRRWTLDGPEKDDSPRETARILNRDLDRERAVAEAKMWGENWREKRRQSTQGSFDGSNG | 466 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 9377727 | 9381873 | - | CmaCh17G014210.1 | Cma17g01421 | 313316 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g01421 | 466 | ProSitePatterns | Protein kinases ATP-binding region signature. | 91 | 114 | IPR017441 | GO:0005524 | |
Cma17g01421 | 466 | MobiDBLite | consensus disorder prediction | 412 | 457 | - | - | |
Cma17g01421 | 466 | SUPERFAMILY | Protein kinase-like (PK-like) | 66 | 359 | IPR011009 | - | |
Cma17g01421 | 466 | Pfam | Protein kinase domain | 90 | 295 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma17g01421 | 466 | MobiDBLite | consensus disorder prediction | 7 | 26 | - | - | |
Cma17g01421 | 466 | ProSiteProfiles | Protein kinase domain profile. | 85 | 362 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma17g01421 | 466 | Gene3D | Transferase(Phosphotransferase) domain 1 | 162 | 375 | - | - | |
Cma17g01421 | 466 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 208 | 220 | IPR008271 | GO:0004672|GO:0006468 | |
Cma17g01421 | 466 | PANTHER | OS07G0668900 PROTEIN | 1 | 461 | - | - | |
Cma17g01421 | 466 | CDD | STKc_IRAK | 91 | 359 | - | - | |
Cma17g01421 | 466 | Gene3D | Phosphorylase Kinase; domain 1 | 47 | 161 | - | - | |
Cma17g01421 | 466 | PANTHER | SERINE/THREONINE-PROTEIN KINASE PBS1 | 1 | 461 | - | - | |
Cma17g01421 | 466 | MobiDBLite | consensus disorder prediction | 366 | 466 | - | - | |
Cma17g01421 | 466 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g01475 | Cma-Chr6:9381522 | Cma17g01421 | Cma-Chr17:9377727 | 0 | dispersed | |
Cma14g01637 | Cma-Chr14:12259054 | Cma17g01421 | Cma-Chr17:9377727 | 0 | dispersed | |
Cma19g00126 | Cma-Chr19:744556 | Cma17g01421 | Cma-Chr17:9377727 | 1.22E-102 | dispersed | |
Cma04g00953 | Cma-Chr4:4887290 | Cma17g01421 | Cma-Chr17:9377727 | 5.41E-180 | transposed | |
Cma14g01086 | Cma-Chr14:7401524 | Cma17g01421 | Cma-Chr17:9377727 | 1.27E-92 | transposed | |
Cma16g00856 | Cma-Chr16:5061478 | Cma17g01421 | Cma-Chr17:9377727 | 1.90E-160 | transposed | |
Cma01g00948 | Cma-Chr1:6020324 | Cma17g01421 | Cma-Chr17:9377727 | 2.38E-147 | transposed | |
Cma17g01421 | Cma-Chr17:9377727 | Cma08g00010 | Cma-Chr8:56342 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
69259 | PF00069 | Pkinase | 4.40E-45 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g01421 | K13430 | - | csv:101219880 | 899.042 |