Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01429 ATGGCAGAGCACAACAACAAGAAGCCATCAGCAGCAGCACCACCACCACCACCATCATCGCCCGCTCCAACACCCCCATCCTCAGATATCATAATTGCAAACCCAAACAAAGATCAAAACAAGAAGCACCAACAACAATTGGCTCCCAAGCGTACTTCCAATAAAGACCGCCACAAGAAAGTGGATGGCCGTGGGCGTAGGATCCGCATGCCTGCCCTCTGCGCCGCCCGCGTCTTCCAATTGACCCGCGAATTAGGCCATAAGACCGACGGCGAGACCATCCAGTGGCTCCTCCAGCAAGCTGAGCCCTCCATCATGGCCGCCACTGGCTCCGGTACCATCCCTGCCTCTGCTCTCCATGCCGCCGGCGTCTCCCTCTCGGACCCCGACACCTCCGTCTCTGTGTCCGCCACCCAGACCCCCAAAATTGACGCCGTCCCAAGACTGAATTGGGCGATGATGGGGGCCAATTTGAACAGATCTCACATGGGTACGCCCGGATTCTGGCCGTCCCTAGGCGGAATCGGGCCGGGGTTCGTCAGCGAGAATCCGGGTTCGATTATGCCCAAATTCGGGTTCCATGGATTCGAATTTCAGGGGATGAATTTGGGATCCGTGAATTTCCCGACGCTAATCGGGAATCAGCAGCCGCAGCAGCAAATACCGGGACTGGAGCTAGGGCTTTCGCAGGAGGGGAATAATGTAAGAGGGATGTTGAACCCGCCTTCGTATTCCCAAATCTATCACCAAATGGGGCAGAGTCGGGACCCCTCTGCGGCGCCATTGGAGCAGGACCAAGCTCCCGATAAAGACAACTCTCAAGAATCGAGATGA 834 56.59 MAEHNNKKPSAAAPPPPPSSPAPTPPSSDIIIANPNKDQNKKHQQQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIMAATGSGTIPASALHAAGVSLSDPDTSVSVSATQTPKIDAVPRLNWAMMGANLNRSHMGTPGFWPSLGGIGPGFVSENPGSIMPKFGFHGFEFQGMNLGSVNFPTLIGNQQPQQQIPGLELGLSQEGNNVRGMLNPPSYSQIYHQMGQSRDPSAAPLEQDQAPDKDNSQESR 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9416103 9416936 - CmaCh17G014290.1 Cma17g01429 313324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01429 277 MobiDBLite consensus disorder prediction 10 25 - -
Cma17g01429 277 MobiDBLite consensus disorder prediction 232 277 - -
Cma17g01429 277 Pfam TCP family transcription factor 52 137 IPR017887 -
Cma17g01429 277 MobiDBLite consensus disorder prediction 1 67 - -
Cma17g01429 277 MobiDBLite consensus disorder prediction 26 42 - -
Cma17g01429 277 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 30 277 - -
Cma17g01429 277 ProSiteProfiles TCP domain profile. 54 108 IPR017887 -
Cma17g01429 277 MobiDBLite consensus disorder prediction 43 59 - -
Cma17g01429 277 MobiDBLite consensus disorder prediction 232 260 - -
Cma17g01429 277 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 30 277 IPR005333 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00904 Cma-Chr2:5387201 Cma17g01429 Cma-Chr17:9416103 2.15E-28 dispersed
Cma17g01429 Cma-Chr17:9416103 Cma10g00186 Cma-Chr10:850757 4.84E-37 dispersed
Cma11g01520 Cma-Chr11:9944628 Cma17g01429 Cma-Chr17:9416103 1.07E-60 wgd
Cma14g00730 Cma-Chr14:3670998 Cma17g01429 Cma-Chr17:9416103 3.71E-69 wgd
Cma17g01429 Cma-Chr17:9416103 Cma08g00005 Cma-Chr8:34378 3.97E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36722 PF03634 TCP 7.20E-30 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01429 - - cmos:111456629 520.39