Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01429 ATGGCAGAGCACAACAACAAGAAGCCATCAGCAGCAGCACCACCACCACCACCATCATCGCCCGCTCCAACACCCCCATCCTCAGATATCATAATTGCAAACCCAAACAAAGATCAAAACAAGAAGCACCAACAACAATTGGCTCCCAAGCGTACTTCCAATAAAGACCGCCACAAGAAAGTGGATGGCCGTGGGCGTAGGATCCGCATGCCTGCCCTCTGCGCCGCCCGCGTCTTCCAATTGACCCGCGAATTAGGCCATAAGACCGACGGCGAGACCATCCAGTGGCTCCTCCAGCAAGCTGAGCCCTCCATCATGGCCGCCACTGGCTCCGGTACCATCCCTGCCTCTGCTCTCCATGCCGCCGGCGTCTCCCTCTCGGACCCCGACACCTCCGTCTCTGTGTCCGCCACCCAGACCCCCAAAATTGACGCCGTCCCAAGACTGAATTGGGCGATGATGGGGGCCAATTTGAACAGATCTCACATGGGTACGCCCGGATTCTGGCCGTCCCTAGGCGGAATCGGGCCGGGGTTCGTCAGCGAGAATCCGGGTTCGATTATGCCCAAATTCGGGTTCCATGGATTCGAATTTCAGGGGATGAATTTGGGATCCGTGAATTTCCCGACGCTAATCGGGAATCAGCAGCCGCAGCAGCAAATACCGGGACTGGAGCTAGGGCTTTCGCAGGAGGGGAATAATGTAAGAGGGATGTTGAACCCGCCTTCGTATTCCCAAATCTATCACCAAATGGGGCAGAGTCGGGACCCCTCTGCGGCGCCATTGGAGCAGGACCAAGCTCCCGATAAAGACAACTCTCAAGAATCGAGATGA 834 56.59 MAEHNNKKPSAAAPPPPPSSPAPTPPSSDIIIANPNKDQNKKHQQQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIMAATGSGTIPASALHAAGVSLSDPDTSVSVSATQTPKIDAVPRLNWAMMGANLNRSHMGTPGFWPSLGGIGPGFVSENPGSIMPKFGFHGFEFQGMNLGSVNFPTLIGNQQPQQQIPGLELGLSQEGNNVRGMLNPPSYSQIYHQMGQSRDPSAAPLEQDQAPDKDNSQESR 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9416103 9416936 - CmaCh17G014290.1 Cma17g01429 313324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01429 277 MobiDBLite consensus disorder prediction 10 25 - -
Cma17g01429 277 MobiDBLite consensus disorder prediction 232 277 - -
Cma17g01429 277 Pfam TCP family transcription factor 52 137 IPR017887 -
Cma17g01429 277 MobiDBLite consensus disorder prediction 1 67 - -
Cma17g01429 277 MobiDBLite consensus disorder prediction 26 42 - -
Cma17g01429 277 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 30 277 - -
Cma17g01429 277 ProSiteProfiles TCP domain profile. 54 108 IPR017887 -
Cma17g01429 277 MobiDBLite consensus disorder prediction 43 59 - -
Cma17g01429 277 MobiDBLite consensus disorder prediction 232 260 - -
Cma17g01429 277 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 30 277 IPR005333 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01429 - - - cmos:111456629 520.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00904 Cma-Chr2:5387201 Cma17g01429 Cma-Chr17:9416103 2.15E-28 dispersed
Cma17g01429 Cma-Chr17:9416103 Cma10g00186 Cma-Chr10:850757 4.84E-37 dispersed
Cma11g01520 Cma-Chr11:9944628 Cma17g01429 Cma-Chr17:9416103 1.07E-60 wgd
Cma14g00730 Cma-Chr14:3670998 Cma17g01429 Cma-Chr17:9416103 3.71E-69 wgd
Cma17g01429 Cma-Chr17:9416103 Cma08g00005 Cma-Chr8:34378 3.97E-151 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma15g00788 . 31 254 TCP Transcription Factor Family AT5G23280 61.9 5.9e-65 245.0
Cma04g01259 . 36 250 TCP Transcription Factor Family AT5G23280 61.8 2.2e-64 243.0
Cma04g02246 . 74 303 TCP Transcription Factor Family AT5G23280 59.9 9.4e-63 237.7
Cma18g00810 . 33 230 TCP Transcription Factor Family AT5G23280 57.6 2.6e-57 219.5
Cma04g01649 CCT,ECH 60 154 TCP Transcription Factor Family AT3G47620 88.7 5.7e-40 162.9
Cma13g01122 CCT,ECH 35 134 TCP Transcription Factor Family AT3G47620 83.0 2.2e-39 161.0
Cma04g01856 . 129 211 TCP Transcription Factor Family AT3G47620 90.4 1.7e-36 151.4
Cma04g01856 . 129 221 TCP Transcription Factor Family AT1G69690 82.8 2.0e-36 150.6
Cma14g00730 . 49 316 TCP Transcription Factor Family AT3G27010 58.8 8.4e-61 231.5
Cma11g01520 . 32 276 TCP Transcription Factor Family AT3G27010 54.4 7.6e-54 208.4
Cma17g01429 . 37 254 TCP Transcription Factor Family AT3G27010 52.8 8.2e-48 188.3
Cma15g00788 . 10 255 TCP Transcription Factor Family AT5G08330 60.0 8.1e-64 241.1
Cma04g02246 . 40 302 TCP Transcription Factor Family AT5G08330 57.5 5.2e-63 238.4
Cma04g01259 . 8 248 TCP Transcription Factor Family AT5G08330 56.0 2.0e-62 236.5
Cma18g00810 . 10 228 TCP Transcription Factor Family AT5G08330 56.2 3.0e-58 222.6
Cma11g00212 CCT 31 173 TCP Transcription Factor Family AT5G60970 58.6 1.6e-39 161.0
Cma14g01163 . 53 164 TCP Transcription Factor Family AT3G02150 66.4 1.9e-37 154.1
Cma11g01924 . 8 162 TCP Transcription Factor Family AT2G31070 54.3 1.7e-36 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012904 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36722 PF03634 TCP 7.20E-30 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g01429 Cma_Chr17 FPKM 9.404077 6.913117 26.737253 24.961576 16.001196 10.979254 13.855602 21.782673 23.210468 22.002369