Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01437 ATGTATTTGAGACTCAGGGGCATTGGTAATATGGGCGATGGTTCTATGGATGACATGAAAGGAACTAGAGTTTCTTTGATCGAGTCATCGGCTTCGAGATTAATGAAGAGGTCACGTGCCCCTGGAAGCGGACCCCAAATCCCTTCCTGTATGGTTGATGGTTGTAGCTCAGACCTTAGCAAATGCAGGGACTATCATCGTCGCCATAAAGTATGTGAGCTCCATTCTAAAACACCAAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGTCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAGCGTCTCGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCGACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTACCATTTGGTAATCAATTACTGTCTGCCAGCAATGATGTGAGCTCTTCTTGGATTGGAATGATCAAACCCGAGAGCAATGCCCCTGTTTGCAGCGGCAACTCACAGTTTGACTTTGGTGACAGAAGAAAAAGTATGTTGCCTGGATCGTTGGCTTGTGATTACAAAGAAAAACAAGTAGCAATCTCTTGCATCCCTGTAGGATTGCTTCCCAAATCATCCGATGCTCGCCCATATCTCGACGTTGAATCCTGCAACAGAGGAAATGTTCAGAAAGTGCTCGGAAACGGACCAGATCAGTTCTTCAACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCCGGGGAGATTAATCTAAGCTCCATGAGCCAATCCAACCTCATCACCCCAGCCCATTTCATCCACAGTGACGGTCTTGGCTTGGAGAGTGACCCTGTTAATTCTGGTTTGGTCTCGGACGGTAGCAGCCATGCCAACATCCGGTGCTACCCGACATTCCAGGATGGTCTTGCTGGATCATCTGTAGATTTATTCAGGTATTGA 987 46.81 MYLRLRGIGNMGDGSMDDMKGTRVSLIESSASRLMKRSRAPGSGPQIPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVSSSWIGMIKPESNAPVCSGNSQFDFGDRRKSMLPGSLACDYKEKQVAISCIPVGLLPKSSDARPYLDVESCNRGNVQKVLGNGPDQFFNSDCALSLLSTPVEPGEINLSSMSQSNLITPAHFIHSDGLGLESDPVNSGLVSDGSSHANIRCYPTFQDGLAGSSVDLFRY 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9453188 9456217 + CmaCh17G014370.1 Cma17g01437 313332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01437 328 SUPERFAMILY SBT domain 48 129 IPR036893 GO:0003677|GO:0005634
Cma17g01437 328 Gene3D - 42 111 IPR036893 GO:0003677|GO:0005634
Cma17g01437 328 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677
Cma17g01437 328 Pfam SBP domain 50 123 IPR004333 GO:0003677
Cma17g01437 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 3 315 IPR044817 GO:0003677
Cma17g01437 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 3 315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00052 Cma-Chr10:189233 Cma17g01437 Cma-Chr17:9453188 5.66E-51 dispersed
Cma10g00286 Cma-Chr10:1271737 Cma17g01437 Cma-Chr17:9453188 1.70E-40 dispersed
Cma17g01437 Cma-Chr17:9453188 Cma18g00310 Cma-Chr18:1655316 1.72E-47 dispersed
Cma18g00021 Cma-Chr18:93182 Cma17g01437 Cma-Chr17:9453188 3.50E-36 dispersed
Cma11g01513 Cma-Chr11:9895580 Cma17g01437 Cma-Chr17:9453188 7.87E-50 wgd
Cma13g00815 Cma-Chr13:6870551 Cma17g01437 Cma-Chr17:9453188 5.35E-52 wgd
Cma14g00725 Cma-Chr14:3636994 Cma17g01437 Cma-Chr17:9453188 1.56E-45 wgd
Cma17g01437 Cma-Chr17:9453188 Cma08g00170 Cma-Chr8:942276 6.62E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36723 PF03110 SBP 7.40E-29 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01437 - - cpep:111787814 628.632