Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01437 ATGTATTTGAGACTCAGGGGCATTGGTAATATGGGCGATGGTTCTATGGATGACATGAAAGGAACTAGAGTTTCTTTGATCGAGTCATCGGCTTCGAGATTAATGAAGAGGTCACGTGCCCCTGGAAGCGGACCCCAAATCCCTTCCTGTATGGTTGATGGTTGTAGCTCAGACCTTAGCAAATGCAGGGACTATCATCGTCGCCATAAAGTATGTGAGCTCCATTCTAAAACACCAAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGTCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAGCGTCTCGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCGACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTACCATTTGGTAATCAATTACTGTCTGCCAGCAATGATGTGAGCTCTTCTTGGATTGGAATGATCAAACCCGAGAGCAATGCCCCTGTTTGCAGCGGCAACTCACAGTTTGACTTTGGTGACAGAAGAAAAAGTATGTTGCCTGGATCGTTGGCTTGTGATTACAAAGAAAAACAAGTAGCAATCTCTTGCATCCCTGTAGGATTGCTTCCCAAATCATCCGATGCTCGCCCATATCTCGACGTTGAATCCTGCAACAGAGGAAATGTTCAGAAAGTGCTCGGAAACGGACCAGATCAGTTCTTCAACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCCGGGGAGATTAATCTAAGCTCCATGAGCCAATCCAACCTCATCACCCCAGCCCATTTCATCCACAGTGACGGTCTTGGCTTGGAGAGTGACCCTGTTAATTCTGGTTTGGTCTCGGACGGTAGCAGCCATGCCAACATCCGGTGCTACCCGACATTCCAGGATGGTCTTGCTGGATCATCTGTAGATTTATTCAGGTATTGA 987 46.81 MYLRLRGIGNMGDGSMDDMKGTRVSLIESSASRLMKRSRAPGSGPQIPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVSSSWIGMIKPESNAPVCSGNSQFDFGDRRKSMLPGSLACDYKEKQVAISCIPVGLLPKSSDARPYLDVESCNRGNVQKVLGNGPDQFFNSDCALSLLSTPVEPGEINLSSMSQSNLITPAHFIHSDGLGLESDPVNSGLVSDGSSHANIRCYPTFQDGLAGSSVDLFRY 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9453188 9456217 + CmaCh17G014370.1 Cma17g01437 313332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01437 328 SUPERFAMILY SBT domain 48 129 IPR036893 GO:0003677|GO:0005634
Cma17g01437 328 Gene3D - 42 111 IPR036893 GO:0003677|GO:0005634
Cma17g01437 328 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677
Cma17g01437 328 Pfam SBP domain 50 123 IPR004333 GO:0003677
Cma17g01437 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 3 315 IPR044817 GO:0003677
Cma17g01437 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 3 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01437 - - - cpep:111787814 628.632
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00052 Cma-Chr10:189233 Cma17g01437 Cma-Chr17:9453188 5.66E-51 dispersed
Cma10g00286 Cma-Chr10:1271737 Cma17g01437 Cma-Chr17:9453188 1.70E-40 dispersed
Cma17g01437 Cma-Chr17:9453188 Cma18g00310 Cma-Chr18:1655316 1.72E-47 dispersed
Cma18g00021 Cma-Chr18:93182 Cma17g01437 Cma-Chr17:9453188 3.50E-36 dispersed
Cma11g01513 Cma-Chr11:9895580 Cma17g01437 Cma-Chr17:9453188 7.87E-50 wgd
Cma13g00815 Cma-Chr13:6870551 Cma17g01437 Cma-Chr17:9453188 5.35E-52 wgd
Cma14g00725 Cma-Chr14:3636994 Cma17g01437 Cma-Chr17:9453188 1.56E-45 wgd
Cma17g01437 Cma-Chr17:9453188 Cma08g00170 Cma-Chr8:942276 6.62E-170 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma14g00958 CST 181 992 SBP-box Gene Family AT2G47070 54.9 1.0e-229 793.9
Cma01g00262 CST 179 1011 SBP-box Gene Family AT2G47070 52.5 2.3e-221 766.1
Cma14g00958 CST 25 992 SBP-box Gene Family AT3G60030 53.7 2.2e-266 916.0
Cma01g00262 CST 25 1011 SBP-box Gene Family AT3G60030 53.2 3.3e-262 902.1
Cma17g01437 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.6e-39 161.0
Cma14g00725 CST 55 169 SBP-box Gene Family AT5G50570 64.1 1.1e-37 154.8
Cma11g01513 CST 63 166 SBP-box Gene Family AT5G50570 67.3 1.5e-37 154.5
Cma08g00170 . 48 165 SBP-box Gene Family AT5G50570 60.8 9.7e-37 151.8
Cma13g01059 . 135 293 SBP-box Gene Family AT1G69170 52.2 6.2e-40 162.5
Cma14g00958 CST 181 992 SBP-box Gene Family AT2G47070 54.9 1.0e-229 793.9
Cma01g00262 CST 179 1011 SBP-box Gene Family AT2G47070 52.5 2.3e-221 766.1
Cma13g01059 . 135 293 SBP-box Gene Family AT1G69170 52.2 6.2e-40 162.5
Cma14g00958 CST 25 992 SBP-box Gene Family AT3G60030 53.7 2.2e-266 916.0
Cma01g00262 CST 25 1011 SBP-box Gene Family AT3G60030 53.2 3.3e-262 902.1
Cma17g01437 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.6e-39 161.0
Cma14g00725 CST 55 169 SBP-box Gene Family AT5G50570 64.1 1.1e-37 154.8
Cma11g01513 CST 63 166 SBP-box Gene Family AT5G50570 67.3 1.5e-37 154.5
Cma08g00170 . 48 165 SBP-box Gene Family AT5G50570 60.8 9.7e-37 151.8
Cma17g01437 . 15 163 SBP-box Gene Family AT5G50670 54.6 1.6e-39 161.0
Cma14g00725 CST 55 169 SBP-box Gene Family AT5G50670 64.1 1.1e-37 154.8
Cma11g01513 CST 63 166 SBP-box Gene Family AT5G50670 67.3 1.5e-37 154.5
Cma08g00170 . 48 165 SBP-box Gene Family AT5G50670 60.8 9.7e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007281 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 2 1 1 1 1 1 5 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36723 PF03110 SBP 7.40E-29 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g01437 Cma_Chr17 FPKM 5.16085 6.37545 14.299569 12.255666 16.763239 17.133837 18.499342 5.835397 6.303932 6.679574