Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01441 ATGATGAACGACGGATATGATGTTCGTGACCTTTATCGAGAAGCACAAACACGTTGGCTGAAGCCTCCTGAGGTGCTATTTATCTTACAGAATCATGAGAAGTATCAGCTGACTGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAGAGATGGTCATAACTGGAGGAAAAAAAGGGACGGAAGAACTGTTGGAGAAGCACACGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAGTCGTGTGACCACATTGTTCTTGTACACTACAGAGATATTAGTGAGGGAAGGTCTGGGGCGGAAAGTGTTCCACAATTATCTCCAGCATCGGCTTCTAGTTCTGGTTCCTATCCGTCCCAAAATCATGCTTTGGAATATCAACATTTATTGAGCCCAGGGTCTGTTGAAGTTAGTTCTGAAACTGGCAACCGTACTATTGCGTCAAATGGCGTGGATAGGCAGTATGAAATATCAGAACTAAAGAGTTCAAACGATCGTGAGGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGACAGCTTGAAAGACATTGGTCCATATTATGGTCACGAGGAAGGTTCAAATTTTAACCTTATAGACTACTATGAGATGTCCATTGAGGATCAGTTTTCAGTACTTCAGCATCCAGAGAATGCTGTCCATGATAATAGTTATACGTCATTTGAGATGCAAGATGCTAGTGGTAAACATTACCGTTATGATATGGCACATGAGTTTATATTTGGTGGTGAAGGAACTCGACCATTGGGTGATGCACTTGGTTCAAGTAAGACAACCGTTCTTGAGTCTCAAGATAGGCATTCTCTCCTATGGAATGAAAATGAAAATCCATCATCATCTTCAACCGTAGACAATGAGCATCGCAACTGGCTGGACAGCGGAGGAAAAACTTTTCCTATGCTAGGAAGCTGCACATCTCCAGAATATGCTTCACCACTAGACACTCATGATGATAATTCCAACTACCACTTATCATTCCTTAAACAAGACCATGGAAATTCTTTTGAAGTTGATACCAGTTTAATTGTTGCACAAGTGCAGAAATTTACAATCCGCCAAATAGTACCTGAACAGGGTTATGCCACTGAGAGTACCAAGTTGCTTTCTCGAATGGACTATTGCGAGGTTGAGGCTAATGCAACTGTCATAATTATTGGATCTTTTCTTTGTGATCCTTCAAAAGCACCATGGGCTTGTATGTTTGGAGATATCGAAGTTCCTCTTCAGGTTGTTCAGAATGGGGTCCTTTGTTTTGAAGCGCCTCCACACCTTCCTGGGAAGGTTGCTTTCTTTATTACATCTGGCAATCGGGAACCCTGCAGTGAAGTCAGAGAGTTCGAATATAAAATGAATGTTTGCAGCCATTGCCAATCACATTCAAGTGGAGCTACGAAGAGCCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATTAATGCAGAAATTTGACGAGGTAGATTCTGAAGTTAGGAGCAATAATTTGAAAGCTGGCGACGATCAATGGAGTTCTTTGATAGAGGCTCTTCTAGTTGGTAGTGAAACTCCTTCTGGTACCATGGATTGGCTACTTCAAGAGCTACTAAAAGACAAGTTGTATCTCTGGCTTTCTTCGCAGAAGAAAGATAGACACGATCTGGCAGGCTTTTCCTTGTCTAAGAAAGAACAAGGTGTCATACACATGATTTCCGGTTTGGGATATGTGTGGGCACTAAACCCGATTCTCAGGTGTGGAGTAAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACATTGGGCAGCACGATTTGGAAGGGAAAAAATGGTCGCTGCATTAATAGCCTCAGGAGCATCAGCTGGCGCTGTGACTGATCCTAGTTCACAAGACCGAGATGGTAAAACTGCAGCATCTATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCGGAGGTTGCCCTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAGGTGAACTTTCCAATGGCTCTGCGGAGATAGAAGCAGAAATAACTGTAAATTGCATTTCAAAGGGGAACCTCTCTTCAGCTGAGGACTGTATCCCTCTGAAAAATACGTTAGCTGCAGTCAGGAATGCTGCTCAGGCAGCGGCCCGTATTCAATCTGCTTTCCGTGCTCATTCTTTCAGAAAGCGACAGCAGAAGGAGGCAACTTTTGCAGCTTGTATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTAGCTATGTCAAAATTGAACTTTTCTAATCGGCGTGATTACAATGCTGCTGCATTATCTATACAAAAAAAATATAGAGGTTGGAAAGGTCGTAGAGAGTTTTTATCAATGCGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGGTATCAAGCTAGGAAGCATCACAAGATAATTTGTTGGGCTGTTGGGATTCTGGATAAAGCTGTATTACGTTGGAGAAGGAAAGGAGTTGGGTTGAGAGGGTTTCGTAGCGAGATAGGGTCCATTGATGAAAGTGAAGATGGCGATATTATAAAGGTGTTCCGCAAACAAAAAGTGGAAGGAACTATTGATGAGGCTGTTTCACGAGTGCTTTCCATGGTTGACTCTCCAGATGCTCGTCAGCAATATCATCGTATGCTTGAAGGATTTCGAGAAGCCAAGGCAAAACTAGATGGCACCGGTAATGAATCCGTAGAATCGACTTGTTTCAGCGATGGTTTCTGA 2895 42.73 MMNDGYDVRDLYREAQTRWLKPPEVLFILQNHEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRRDGHNWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDQSCDHIVLVHYRDISEGRSGAESVPQLSPASASSSGSYPSQNHALEYQHLLSPGSVEVSSETGNRTIASNGVDRQYEISELKSSNDREVSQALRRIEEQLSLNEDSLKDIGPYYGHEEGSNFNLIDYYEMSIEDQFSVLQHPENAVHDNSYTSFEMQDASGKHYRYDMAHEFIFGGEGTRPLGDALGSSKTTVLESQDRHSLLWNENENPSSSSTVDNEHRNWLDSGGKTFPMLGSCTSPEYASPLDTHDDNSNYHLSFLKQDHGNSFEVDTSLIVAQVQKFTIRQIVPEQGYATESTKLLSRMDYCEVEANATVIIIGSFLCDPSKAPWACMFGDIEVPLQVVQNGVLCFEAPPHLPGKVAFFITSGNREPCSEVREFEYKMNVCSHCQSHSSGATKSPEELLLLVRLVQLLLSDSLMQKFDEVDSEVRSNNLKAGDDQWSSLIEALLVGSETPSGTMDWLLQELLKDKLYLWLSSQKKDRHDLAGFSLSKKEQGVIHMISGLGYVWALNPILRCGVNINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSSQDRDGKTAASIADIHGHKGLAGYLSEVALTSHLSSLTFEEGELSNGSAEIEAEITVNCISKGNLSSAEDCIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEATFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRREFLSMRQKVVKIQAHVRGYQARKHHKIICWAVGILDKAVLRWRRKGVGLRGFRSEIGSIDESEDGDIIKVFRKQKVEGTIDEAVSRVLSMVDSPDARQQYHRMLEGFREAKAKLDGTGNESVESTCFSDGF 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9468880 9484900 + CmaCh17G014410.1 Cma17g01441 313336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01441 964 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 2 954 - -
Cma17g01441 964 ProSiteProfiles Ankyrin repeat profile. 640 672 IPR002110 GO:0005515
Cma17g01441 964 Pfam CG-1 domain 14 127 IPR005559 GO:0003677
Cma17g01441 964 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677
Cma17g01441 964 MobiDBLite consensus disorder prediction 135 153 - -
Cma17g01441 964 Gene3D Immunoglobulins 391 499 IPR013783 -
Cma17g01441 964 SUPERFAMILY Ankyrin repeat 610 701 IPR036770 -
Cma17g01441 964 Pfam IQ calmodulin-binding motif 817 835 IPR000048 GO:0005515
Cma17g01441 964 Pfam IQ calmodulin-binding motif 840 859 IPR000048 GO:0005515
Cma17g01441 964 Gene3D - 815 861 - -
Cma17g01441 964 ProSiteProfiles IQ motif profile. 758 786 IPR000048 GO:0005515
Cma17g01441 964 ProSiteProfiles IQ motif profile. 838 862 IPR000048 GO:0005515
Cma17g01441 964 SMART CG_1_2 11 129 IPR005559 GO:0003677
Cma17g01441 964 MobiDBLite consensus disorder prediction 133 153 - -
Cma17g01441 964 ProSiteProfiles IQ motif profile. 815 844 IPR000048 GO:0005515
Cma17g01441 964 SUPERFAMILY E set domains 426 495 IPR014756 -
Cma17g01441 964 SMART iq_5 757 779 IPR000048 GO:0005515
Cma17g01441 964 SMART iq_5 814 836 IPR000048 GO:0005515
Cma17g01441 964 SMART iq_5 837 859 IPR000048 GO:0005515
Cma17g01441 964 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 761 866 IPR027417 -
Cma17g01441 964 Gene3D - 515 705 IPR036770 -
Cma17g01441 964 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 2 954 - -
Cma17g01441 964 Pfam Ankyrin repeats (3 copies) 622 699 IPR002110 GO:0005515
Cma17g01441 964 ProSiteProfiles Ankyrin repeat region circular profile. 640 666 - -
Cma17g01441 964 SMART ANK_2a 640 669 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01441 K21596 CAMTA; calmodulin-binding transcription activator - csv:101222798 1597.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00713 Cma-Chr16:3713192 Cma17g01441 Cma-Chr17:9468880 1.39E-41 dispersed
Cma17g00358 Cma-Chr17:1984908 Cma17g01441 Cma-Chr17:9468880 1.11E-119 dispersed
Cma17g01441 Cma-Chr17:9468880 Cma19g00254 Cma-Chr19:1804145 2.91E-45 dispersed
Cma17g01441 Cma-Chr17:9468880 Cma08g00177 Cma-Chr8:990472 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma11g01650 . 1 1091 CAMTA Transcription Factor Family AT5G64220 52.9 7.0e-269 924.5
Cma19g00254 . 1 1090 CAMTA Transcription Factor Family AT5G64220 52.5 3.8e-267 918.7
Cma17g01441 . 6 950 CAMTA Transcription Factor Family AT1G67310 50.2 2.0e-244 843.2
Cma08g00177 . 5 887 CAMTA Transcription Factor Family AT1G67310 51.3 1.6e-233 807.0
Cma08g01266 CCT,CST 34 905 CAMTA Transcription Factor Family AT3G16940 54.9 4.2e-261 898.3
Cma17g00358 CCT,CST 34 903 CAMTA Transcription Factor Family AT3G16940 52.8 1.7e-246 849.7
Cma08g01266 CCT,CST 11 629 CAMTA Transcription Factor Family AT4G16150 53.3 4.6e-192 669.1
Cma17g00358 CCT,CST 11 627 CAMTA Transcription Factor Family AT4G16150 51.8 2.5e-185 646.7
Cma11g01650 . 1 1091 CAMTA Transcription Factor Family AT5G64220 52.9 7.0e-269 924.5
Cma19g00254 . 1 1090 CAMTA Transcription Factor Family AT5G64220 52.5 3.8e-267 918.7
Cma17g01441 . 6 950 CAMTA Transcription Factor Family AT1G67310 50.2 2.0e-244 843.2
Cma08g00177 . 5 887 CAMTA Transcription Factor Family AT1G67310 51.3 1.6e-233 807.0
Cma08g01266 CCT,CST 11 629 CAMTA Transcription Factor Family AT4G16150 53.3 4.6e-192 669.1
Cma17g00358 CCT,CST 11 627 CAMTA Transcription Factor Family AT4G16150 51.8 2.5e-185 646.7
Cma08g01266 CCT,CST 34 905 CAMTA Transcription Factor Family AT3G16940 54.9 4.2e-261 898.3
Cma17g00358 CCT,CST 34 903 CAMTA Transcription Factor Family AT3G16940 52.8 1.7e-246 849.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36725 PF03859 CG-1 2.30E-48 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g01441 Cma_Chr17 FPKM 13.703486 14.804344 11.720569 13.027068 12.380646 11.80807 13.149655 9.902005 9.804568 9.61839