Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01441 ATGATGAACGACGGATATGATGTTCGTGACCTTTATCGAGAAGCACAAACACGTTGGCTGAAGCCTCCTGAGGTGCTATTTATCTTACAGAATCATGAGAAGTATCAGCTGACTGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAGAGATGGTCATAACTGGAGGAAAAAAAGGGACGGAAGAACTGTTGGAGAAGCACACGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAGTCGTGTGACCACATTGTTCTTGTACACTACAGAGATATTAGTGAGGGAAGGTCTGGGGCGGAAAGTGTTCCACAATTATCTCCAGCATCGGCTTCTAGTTCTGGTTCCTATCCGTCCCAAAATCATGCTTTGGAATATCAACATTTATTGAGCCCAGGGTCTGTTGAAGTTAGTTCTGAAACTGGCAACCGTACTATTGCGTCAAATGGCGTGGATAGGCAGTATGAAATATCAGAACTAAAGAGTTCAAACGATCGTGAGGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGACAGCTTGAAAGACATTGGTCCATATTATGGTCACGAGGAAGGTTCAAATTTTAACCTTATAGACTACTATGAGATGTCCATTGAGGATCAGTTTTCAGTACTTCAGCATCCAGAGAATGCTGTCCATGATAATAGTTATACGTCATTTGAGATGCAAGATGCTAGTGGTAAACATTACCGTTATGATATGGCACATGAGTTTATATTTGGTGGTGAAGGAACTCGACCATTGGGTGATGCACTTGGTTCAAGTAAGACAACCGTTCTTGAGTCTCAAGATAGGCATTCTCTCCTATGGAATGAAAATGAAAATCCATCATCATCTTCAACCGTAGACAATGAGCATCGCAACTGGCTGGACAGCGGAGGAAAAACTTTTCCTATGCTAGGAAGCTGCACATCTCCAGAATATGCTTCACCACTAGACACTCATGATGATAATTCCAACTACCACTTATCATTCCTTAAACAAGACCATGGAAATTCTTTTGAAGTTGATACCAGTTTAATTGTTGCACAAGTGCAGAAATTTACAATCCGCCAAATAGTACCTGAACAGGGTTATGCCACTGAGAGTACCAAGTTGCTTTCTCGAATGGACTATTGCGAGGTTGAGGCTAATGCAACTGTCATAATTATTGGATCTTTTCTTTGTGATCCTTCAAAAGCACCATGGGCTTGTATGTTTGGAGATATCGAAGTTCCTCTTCAGGTTGTTCAGAATGGGGTCCTTTGTTTTGAAGCGCCTCCACACCTTCCTGGGAAGGTTGCTTTCTTTATTACATCTGGCAATCGGGAACCCTGCAGTGAAGTCAGAGAGTTCGAATATAAAATGAATGTTTGCAGCCATTGCCAATCACATTCAAGTGGAGCTACGAAGAGCCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATTAATGCAGAAATTTGACGAGGTAGATTCTGAAGTTAGGAGCAATAATTTGAAAGCTGGCGACGATCAATGGAGTTCTTTGATAGAGGCTCTTCTAGTTGGTAGTGAAACTCCTTCTGGTACCATGGATTGGCTACTTCAAGAGCTACTAAAAGACAAGTTGTATCTCTGGCTTTCTTCGCAGAAGAAAGATAGACACGATCTGGCAGGCTTTTCCTTGTCTAAGAAAGAACAAGGTGTCATACACATGATTTCCGGTTTGGGATATGTGTGGGCACTAAACCCGATTCTCAGGTGTGGAGTAAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACATTGGGCAGCACGATTTGGAAGGGAAAAAATGGTCGCTGCATTAATAGCCTCAGGAGCATCAGCTGGCGCTGTGACTGATCCTAGTTCACAAGACCGAGATGGTAAAACTGCAGCATCTATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCGGAGGTTGCCCTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAGGTGAACTTTCCAATGGCTCTGCGGAGATAGAAGCAGAAATAACTGTAAATTGCATTTCAAAGGGGAACCTCTCTTCAGCTGAGGACTGTATCCCTCTGAAAAATACGTTAGCTGCAGTCAGGAATGCTGCTCAGGCAGCGGCCCGTATTCAATCTGCTTTCCGTGCTCATTCTTTCAGAAAGCGACAGCAGAAGGAGGCAACTTTTGCAGCTTGTATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTAGCTATGTCAAAATTGAACTTTTCTAATCGGCGTGATTACAATGCTGCTGCATTATCTATACAAAAAAAATATAGAGGTTGGAAAGGTCGTAGAGAGTTTTTATCAATGCGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGGTATCAAGCTAGGAAGCATCACAAGATAATTTGTTGGGCTGTTGGGATTCTGGATAAAGCTGTATTACGTTGGAGAAGGAAAGGAGTTGGGTTGAGAGGGTTTCGTAGCGAGATAGGGTCCATTGATGAAAGTGAAGATGGCGATATTATAAAGGTGTTCCGCAAACAAAAAGTGGAAGGAACTATTGATGAGGCTGTTTCACGAGTGCTTTCCATGGTTGACTCTCCAGATGCTCGTCAGCAATATCATCGTATGCTTGAAGGATTTCGAGAAGCCAAGGCAAAACTAGATGGCACCGGTAATGAATCCGTAGAATCGACTTGTTTCAGCGATGGTTTCTGA 2895 42.73 MMNDGYDVRDLYREAQTRWLKPPEVLFILQNHEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRRDGHNWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDQSCDHIVLVHYRDISEGRSGAESVPQLSPASASSSGSYPSQNHALEYQHLLSPGSVEVSSETGNRTIASNGVDRQYEISELKSSNDREVSQALRRIEEQLSLNEDSLKDIGPYYGHEEGSNFNLIDYYEMSIEDQFSVLQHPENAVHDNSYTSFEMQDASGKHYRYDMAHEFIFGGEGTRPLGDALGSSKTTVLESQDRHSLLWNENENPSSSSTVDNEHRNWLDSGGKTFPMLGSCTSPEYASPLDTHDDNSNYHLSFLKQDHGNSFEVDTSLIVAQVQKFTIRQIVPEQGYATESTKLLSRMDYCEVEANATVIIIGSFLCDPSKAPWACMFGDIEVPLQVVQNGVLCFEAPPHLPGKVAFFITSGNREPCSEVREFEYKMNVCSHCQSHSSGATKSPEELLLLVRLVQLLLSDSLMQKFDEVDSEVRSNNLKAGDDQWSSLIEALLVGSETPSGTMDWLLQELLKDKLYLWLSSQKKDRHDLAGFSLSKKEQGVIHMISGLGYVWALNPILRCGVNINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSSQDRDGKTAASIADIHGHKGLAGYLSEVALTSHLSSLTFEEGELSNGSAEIEAEITVNCISKGNLSSAEDCIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEATFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRREFLSMRQKVVKIQAHVRGYQARKHHKIICWAVGILDKAVLRWRRKGVGLRGFRSEIGSIDESEDGDIIKVFRKQKVEGTIDEAVSRVLSMVDSPDARQQYHRMLEGFREAKAKLDGTGNESVESTCFSDGF 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9468880 9484900 + CmaCh17G014410.1 Cma17g01441 313336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01441 964 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 2 954 - -
Cma17g01441 964 ProSiteProfiles Ankyrin repeat profile. 640 672 IPR002110 GO:0005515
Cma17g01441 964 Pfam CG-1 domain 14 127 IPR005559 GO:0003677
Cma17g01441 964 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677
Cma17g01441 964 MobiDBLite consensus disorder prediction 135 153 - -
Cma17g01441 964 Gene3D Immunoglobulins 391 499 IPR013783 -
Cma17g01441 964 SUPERFAMILY Ankyrin repeat 610 701 IPR036770 -
Cma17g01441 964 Pfam IQ calmodulin-binding motif 817 835 IPR000048 GO:0005515
Cma17g01441 964 Pfam IQ calmodulin-binding motif 840 859 IPR000048 GO:0005515
Cma17g01441 964 Gene3D - 815 861 - -
Cma17g01441 964 ProSiteProfiles IQ motif profile. 758 786 IPR000048 GO:0005515
Cma17g01441 964 ProSiteProfiles IQ motif profile. 838 862 IPR000048 GO:0005515
Cma17g01441 964 SMART CG_1_2 11 129 IPR005559 GO:0003677
Cma17g01441 964 MobiDBLite consensus disorder prediction 133 153 - -
Cma17g01441 964 ProSiteProfiles IQ motif profile. 815 844 IPR000048 GO:0005515
Cma17g01441 964 SUPERFAMILY E set domains 426 495 IPR014756 -
Cma17g01441 964 SMART iq_5 757 779 IPR000048 GO:0005515
Cma17g01441 964 SMART iq_5 814 836 IPR000048 GO:0005515
Cma17g01441 964 SMART iq_5 837 859 IPR000048 GO:0005515
Cma17g01441 964 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 761 866 IPR027417 -
Cma17g01441 964 Gene3D - 515 705 IPR036770 -
Cma17g01441 964 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 2 954 - -
Cma17g01441 964 Pfam Ankyrin repeats (3 copies) 622 699 IPR002110 GO:0005515
Cma17g01441 964 ProSiteProfiles Ankyrin repeat region circular profile. 640 666 - -
Cma17g01441 964 SMART ANK_2a 640 669 IPR002110 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00713 Cma-Chr16:3713192 Cma17g01441 Cma-Chr17:9468880 1.39E-41 dispersed
Cma17g00358 Cma-Chr17:1984908 Cma17g01441 Cma-Chr17:9468880 1.11E-119 dispersed
Cma17g01441 Cma-Chr17:9468880 Cma19g00254 Cma-Chr19:1804145 2.91E-45 dispersed
Cma17g01441 Cma-Chr17:9468880 Cma08g00177 Cma-Chr8:990472 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36725 PF03859 CG-1 2.30E-48 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01441 K21596 - csv:101222798 1597.41