Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g01441 | ATGATGAACGACGGATATGATGTTCGTGACCTTTATCGAGAAGCACAAACACGTTGGCTGAAGCCTCCTGAGGTGCTATTTATCTTACAGAATCATGAGAAGTATCAGCTGACTGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAGAGATGGTCATAACTGGAGGAAAAAAAGGGACGGAAGAACTGTTGGAGAAGCACACGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAGTCGTGTGACCACATTGTTCTTGTACACTACAGAGATATTAGTGAGGGAAGGTCTGGGGCGGAAAGTGTTCCACAATTATCTCCAGCATCGGCTTCTAGTTCTGGTTCCTATCCGTCCCAAAATCATGCTTTGGAATATCAACATTTATTGAGCCCAGGGTCTGTTGAAGTTAGTTCTGAAACTGGCAACCGTACTATTGCGTCAAATGGCGTGGATAGGCAGTATGAAATATCAGAACTAAAGAGTTCAAACGATCGTGAGGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGACAGCTTGAAAGACATTGGTCCATATTATGGTCACGAGGAAGGTTCAAATTTTAACCTTATAGACTACTATGAGATGTCCATTGAGGATCAGTTTTCAGTACTTCAGCATCCAGAGAATGCTGTCCATGATAATAGTTATACGTCATTTGAGATGCAAGATGCTAGTGGTAAACATTACCGTTATGATATGGCACATGAGTTTATATTTGGTGGTGAAGGAACTCGACCATTGGGTGATGCACTTGGTTCAAGTAAGACAACCGTTCTTGAGTCTCAAGATAGGCATTCTCTCCTATGGAATGAAAATGAAAATCCATCATCATCTTCAACCGTAGACAATGAGCATCGCAACTGGCTGGACAGCGGAGGAAAAACTTTTCCTATGCTAGGAAGCTGCACATCTCCAGAATATGCTTCACCACTAGACACTCATGATGATAATTCCAACTACCACTTATCATTCCTTAAACAAGACCATGGAAATTCTTTTGAAGTTGATACCAGTTTAATTGTTGCACAAGTGCAGAAATTTACAATCCGCCAAATAGTACCTGAACAGGGTTATGCCACTGAGAGTACCAAGTTGCTTTCTCGAATGGACTATTGCGAGGTTGAGGCTAATGCAACTGTCATAATTATTGGATCTTTTCTTTGTGATCCTTCAAAAGCACCATGGGCTTGTATGTTTGGAGATATCGAAGTTCCTCTTCAGGTTGTTCAGAATGGGGTCCTTTGTTTTGAAGCGCCTCCACACCTTCCTGGGAAGGTTGCTTTCTTTATTACATCTGGCAATCGGGAACCCTGCAGTGAAGTCAGAGAGTTCGAATATAAAATGAATGTTTGCAGCCATTGCCAATCACATTCAAGTGGAGCTACGAAGAGCCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATTAATGCAGAAATTTGACGAGGTAGATTCTGAAGTTAGGAGCAATAATTTGAAAGCTGGCGACGATCAATGGAGTTCTTTGATAGAGGCTCTTCTAGTTGGTAGTGAAACTCCTTCTGGTACCATGGATTGGCTACTTCAAGAGCTACTAAAAGACAAGTTGTATCTCTGGCTTTCTTCGCAGAAGAAAGATAGACACGATCTGGCAGGCTTTTCCTTGTCTAAGAAAGAACAAGGTGTCATACACATGATTTCCGGTTTGGGATATGTGTGGGCACTAAACCCGATTCTCAGGTGTGGAGTAAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACATTGGGCAGCACGATTTGGAAGGGAAAAAATGGTCGCTGCATTAATAGCCTCAGGAGCATCAGCTGGCGCTGTGACTGATCCTAGTTCACAAGACCGAGATGGTAAAACTGCAGCATCTATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCGGAGGTTGCCCTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAGGTGAACTTTCCAATGGCTCTGCGGAGATAGAAGCAGAAATAACTGTAAATTGCATTTCAAAGGGGAACCTCTCTTCAGCTGAGGACTGTATCCCTCTGAAAAATACGTTAGCTGCAGTCAGGAATGCTGCTCAGGCAGCGGCCCGTATTCAATCTGCTTTCCGTGCTCATTCTTTCAGAAAGCGACAGCAGAAGGAGGCAACTTTTGCAGCTTGTATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTAGCTATGTCAAAATTGAACTTTTCTAATCGGCGTGATTACAATGCTGCTGCATTATCTATACAAAAAAAATATAGAGGTTGGAAAGGTCGTAGAGAGTTTTTATCAATGCGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGGTATCAAGCTAGGAAGCATCACAAGATAATTTGTTGGGCTGTTGGGATTCTGGATAAAGCTGTATTACGTTGGAGAAGGAAAGGAGTTGGGTTGAGAGGGTTTCGTAGCGAGATAGGGTCCATTGATGAAAGTGAAGATGGCGATATTATAAAGGTGTTCCGCAAACAAAAAGTGGAAGGAACTATTGATGAGGCTGTTTCACGAGTGCTTTCCATGGTTGACTCTCCAGATGCTCGTCAGCAATATCATCGTATGCTTGAAGGATTTCGAGAAGCCAAGGCAAAACTAGATGGCACCGGTAATGAATCCGTAGAATCGACTTGTTTCAGCGATGGTTTCTGA | 2895 | 42.73 | MMNDGYDVRDLYREAQTRWLKPPEVLFILQNHEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRRDGHNWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDQSCDHIVLVHYRDISEGRSGAESVPQLSPASASSSGSYPSQNHALEYQHLLSPGSVEVSSETGNRTIASNGVDRQYEISELKSSNDREVSQALRRIEEQLSLNEDSLKDIGPYYGHEEGSNFNLIDYYEMSIEDQFSVLQHPENAVHDNSYTSFEMQDASGKHYRYDMAHEFIFGGEGTRPLGDALGSSKTTVLESQDRHSLLWNENENPSSSSTVDNEHRNWLDSGGKTFPMLGSCTSPEYASPLDTHDDNSNYHLSFLKQDHGNSFEVDTSLIVAQVQKFTIRQIVPEQGYATESTKLLSRMDYCEVEANATVIIIGSFLCDPSKAPWACMFGDIEVPLQVVQNGVLCFEAPPHLPGKVAFFITSGNREPCSEVREFEYKMNVCSHCQSHSSGATKSPEELLLLVRLVQLLLSDSLMQKFDEVDSEVRSNNLKAGDDQWSSLIEALLVGSETPSGTMDWLLQELLKDKLYLWLSSQKKDRHDLAGFSLSKKEQGVIHMISGLGYVWALNPILRCGVNINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSSQDRDGKTAASIADIHGHKGLAGYLSEVALTSHLSSLTFEEGELSNGSAEIEAEITVNCISKGNLSSAEDCIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEATFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRREFLSMRQKVVKIQAHVRGYQARKHHKIICWAVGILDKAVLRWRRKGVGLRGFRSEIGSIDESEDGDIIKVFRKQKVEGTIDEAVSRVLSMVDSPDARQQYHRMLEGFREAKAKLDGTGNESVESTCFSDGF | 964 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 9468880 | 9484900 | + | CmaCh17G014410.1 | Cma17g01441 | 313336 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g01441 | 964 | PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA | 2 | 954 | - | - | |
Cma17g01441 | 964 | ProSiteProfiles | Ankyrin repeat profile. | 640 | 672 | IPR002110 | GO:0005515 | |
Cma17g01441 | 964 | Pfam | CG-1 domain | 14 | 127 | IPR005559 | GO:0003677 | |
Cma17g01441 | 964 | ProSiteProfiles | CG-1 DNA-binding domain profile. | 8 | 134 | IPR005559 | GO:0003677 | |
Cma17g01441 | 964 | MobiDBLite | consensus disorder prediction | 135 | 153 | - | - | |
Cma17g01441 | 964 | Gene3D | Immunoglobulins | 391 | 499 | IPR013783 | - | |
Cma17g01441 | 964 | SUPERFAMILY | Ankyrin repeat | 610 | 701 | IPR036770 | - | |
Cma17g01441 | 964 | Pfam | IQ calmodulin-binding motif | 817 | 835 | IPR000048 | GO:0005515 | |
Cma17g01441 | 964 | Pfam | IQ calmodulin-binding motif | 840 | 859 | IPR000048 | GO:0005515 | |
Cma17g01441 | 964 | Gene3D | - | 815 | 861 | - | - | |
Cma17g01441 | 964 | ProSiteProfiles | IQ motif profile. | 758 | 786 | IPR000048 | GO:0005515 | |
Cma17g01441 | 964 | ProSiteProfiles | IQ motif profile. | 838 | 862 | IPR000048 | GO:0005515 | |
Cma17g01441 | 964 | SMART | CG_1_2 | 11 | 129 | IPR005559 | GO:0003677 | |
Cma17g01441 | 964 | MobiDBLite | consensus disorder prediction | 133 | 153 | - | - | |
Cma17g01441 | 964 | ProSiteProfiles | IQ motif profile. | 815 | 844 | IPR000048 | GO:0005515 | |
Cma17g01441 | 964 | SUPERFAMILY | E set domains | 426 | 495 | IPR014756 | - | |
Cma17g01441 | 964 | SMART | iq_5 | 757 | 779 | IPR000048 | GO:0005515 | |
Cma17g01441 | 964 | SMART | iq_5 | 814 | 836 | IPR000048 | GO:0005515 | |
Cma17g01441 | 964 | SMART | iq_5 | 837 | 859 | IPR000048 | GO:0005515 | |
Cma17g01441 | 964 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 761 | 866 | IPR027417 | - | |
Cma17g01441 | 964 | Gene3D | - | 515 | 705 | IPR036770 | - | |
Cma17g01441 | 964 | PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 | 2 | 954 | - | - | |
Cma17g01441 | 964 | Pfam | Ankyrin repeats (3 copies) | 622 | 699 | IPR002110 | GO:0005515 | |
Cma17g01441 | 964 | ProSiteProfiles | Ankyrin repeat region circular profile. | 640 | 666 | - | - | |
Cma17g01441 | 964 | SMART | ANK_2a | 640 | 669 | IPR002110 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma16g00713 | Cma-Chr16:3713192 | Cma17g01441 | Cma-Chr17:9468880 | 1.39E-41 | dispersed | |
Cma17g00358 | Cma-Chr17:1984908 | Cma17g01441 | Cma-Chr17:9468880 | 1.11E-119 | dispersed | |
Cma17g01441 | Cma-Chr17:9468880 | Cma19g00254 | Cma-Chr19:1804145 | 2.91E-45 | dispersed | |
Cma17g01441 | Cma-Chr17:9468880 | Cma08g00177 | Cma-Chr8:990472 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36725 | PF03859 | CG-1 | 2.30E-48 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g01441 | K21596 | - | csv:101222798 | 1597.41 |