Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01443 ATGAGTTCATTCTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCTTCACCTGCAACTTCTACTGCCAGCTCTAGTCCTTTTAATGTCTTTCTGCTCTATAGATCTTTTCAGATTATATGGTTGATTTCCATGAACTGGTTCATTAATGGTGGAGGTATGGAAGCTAAGACTGGTTTGCTTGGTGGGGGTGGGAAGATATGGCTCCAATTGTGGGAGGTCATTGGGAACTGTTTCAAGATGCATCACCAGTACTACCAGTATATTGGATCCAAGAAAGTGAGAAAAACATGGTGGAGGAGGGTTTTGGTGGCCTGGGTTCTTAGCTCTGCTCTTGCTTCTTTATGGATCTTCCACTACATGAGCTCCCAAGCTACAGAAAAGAGGAAAGAGGCCTTGGGAAGCATGTGTGATGAGAGGGCTAGGATGCTTCAAGACCAGTTTAATGTCAGCATGAATCATATCCAGGCAATGTCTATCCTCATCTCCACCTTCCATCATGGCAAGAACGTATCTGCTATAGATCAGAGGACCTTTGCGAGGTACACAGAAAGAACTGCTTTTGAGAGGCCTCTTACCAGTGGTGTGGCGTATGCAGTAAGGGTGCTTCATTCTGAAAGAGAACATTTTGAGAAGCAACAGGGCTGGACAATTAAAAGGATGGACAAAATTGAACAAAGCCCGGTTCACGAAGATGACTATGCTCCAGAAGACCTGGAGCCATCACCCACCCAAGACGAATATGCTCCTGTAATCTTCGCACAGGATACAATTTCTCATGTCGTTTCTCTTGATATGCTGTCGGGAGTGGAAGACCGTAAGAATGTAATTCGTGCTAGAGCGTCAGGAAAGGGAGTCTTAACTGCTCCATTCAGGTTAATCAAAACAAATCGTCTAGGCGTCATACTTACATTTGCGGTCTACAAGAGAGATCTTCCATCAAATGCCACTCCAAATGAGAGGATTCAAGCTACAGATGGGTATCTTGGGGGAGTTTTTGATATCGAGTCGCTGGTGGAGAAGTTACTTCAACAGCTTGCAAGCAACCAAACCATCTTAGTTAATGTTTATGATACCACTAACCAATCACATCCGATCAGTATGTATGGTAAAGATGTATCAGAAGATGGGTTGCAGCATGTTAGTCCCCTCAACTTTGGGGATCCAGATAGGAAGCATGAGATGCGATGCAGATTCAAACAAAAACAAGCTTGGCCATGGTTAGCAATGACAACTTCAATTGGCATACTCATTATTGCATTGCTTTTGGGGTATATATTCCATGCAACCTTGAACCGAATTGCTAAAGTGGAGGATGATTATCATGAGATGATGGAACTCAAGAAACGGGCAGAAGATGCTGATGTTGCCAAATCCCAGTTTCTTGCAACTGTTTCCCATGAGATCAGAACCCCAATGAATGGTGTTCTAGGAATGTTGCATTTGCTAATGGACACAGACTTGGATGTGACTCAACAAGATTATGTTAAAACTGCACAAGATAGTGGAAAAGCTTTGGTATCATTGATAAACGAGGTTTTGGATCAGGCAAAAATTGAATCTGGAAAGCTTGAGCTTGAAGCAATACCATTTAATCTCCGAGCAATTTTGGATGATATTTTATCGCTCTTTTCTGGGAAATCTCAAGAAAAAGGACTGGAGCTGGCAGTTTACATCTCAGATAGTGTTCCTGAGATGCTTATTGGTGATCCTGGAAGGTTTAGGCAAATTATCACTAATCTCATAGGAAACTCAATCAAGGCAAGTAATGCTTTCTTCTGTACTGCTAAAAAACTATTTACAGAGAAAGGACACATCTTTGTCACTGTTAATCTCGTCGAGGAGGTTATTGAATCGATTGATCTCGAGATCGAGTCATCAACAAATAGCACCTTGAGTGGCTATCCTATTGCCAATAGACGTCTCAGCTGGGCAGGATTTCAAACGTTCAGTGAAGAGAGACCCTCTGCTTGTCATTTCATGCCATCTCCACCAGAGCTTATTAACCTCATGGTATCTGTGGAAGATACGGGCGTTGGTATTCCTCTGGAAGCCCAATCATGCGTTTTCACTCCCTTCATGCAGGTTCGACCATCCATCTCTAGAACGCATGGGGGAACGGGTATTGGGCTGAGTATTAGCAAATGTTTGGTTGGCCTCATGAAGGGGGAGATTGGTTTTGTGAGTGTACCTAAGATTGGCTCTACCTTCACATTCACGGCGGTATTCACAAAATGCTCTTCCAATTCAAGTGAATATAACAAAACCCAACAAATTAAGAACATTTCCATCCCAACATCCTCTGAATTTAAGGGTATGAGGGCACTAATTGTGGACCATCGACCTATTCGGGCCAAAGTATCAAGATATCATATTCAACGCCTTGGAATAAATGTTGAAGTCTTATCTGACTTGAATCAATGCCTGTCTTCCTCGACTATTAGTGGTTCAACTATCAATATGATTTTTGTTGAGCAAGATCTTTGGGATAAGGATACGAGCACATCTGATCTCTTTATCAAGAACTTGAGAAATTCTTATGGGGTTCCTCCCAAACTATTTTTTCTTACTACCTCCATTAGTTCTTCAAAAGCTAGCACTATAGTTTCTGATGTATTCACTCCCACAGTCATCTTAAAGCCCTTGAGGTCAGGCATGCTCGCTGCCTCTCTTCACAGAGTCATGGGTGTAGGGATCAAGGGTAATCCTCGCAATGGAGAGCTTCCTGTACTCTCACTCCGTAATTTACTTCTTGGTCGAAAAATTCTGGTAATAGATGACAATAAGGTAAATCGTATTGTCGCTGCTGGTGCTCTACAGCGGTATGGAGCGGACGTCGTATGTGAAAACAGTGGAAGAGAAGCAATCCGACTGCTTACGCCACCCCACCATTTTGATGCATGCTTCATGGATATTCAGATGCCAGAAATGGACGGCTTTGAAGCTACAAGAAGAATTCGGGAAATCGAACTTCAAATAAAAAATGGTATCCAAGCTGGAGAACTATCAATAGAAGCATACGAAAATAAATGCGATTGGGGTGTACCCATCTTGGCCATGACTGCAGACGTAATCCAGGCTACACATGAGGAATGCCTAAAGGGGGGGATGAATGGGTATGTTTCGAAACCATTTGAAGTTGAACGGCTTTACCGAGAAGTCTCTCAATGTTTCCGCAGAACCTCAAATGGAACTTTGTAG 3204 42.7 MSSFSSSSSSSSSSSSSSPATSTASSSPFNVFLLYRSFQIIWLISMNWFINGGGMEAKTGLLGGGGKIWLQLWEVIGNCFKMHHQYYQYIGSKKVRKTWWRRVLVAWVLSSALASLWIFHYMSSQATEKRKEALGSMCDERARMLQDQFNVSMNHIQAMSILISTFHHGKNVSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREHFEKQQGWTIKRMDKIEQSPVHEDDYAPEDLEPSPTQDEYAPVIFAQDTISHVVSLDMLSGVEDRKNVIRARASGKGVLTAPFRLIKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDIESLVEKLLQQLASNQTILVNVYDTTNQSHPISMYGKDVSEDGLQHVSPLNFGDPDRKHEMRCRFKQKQAWPWLAMTTSIGILIIALLLGYIFHATLNRIAKVEDDYHEMMELKKRAEDADVAKSQFLATVSHEIRTPMNGVLGMLHLLMDTDLDVTQQDYVKTAQDSGKALVSLINEVLDQAKIESGKLELEAIPFNLRAILDDILSLFSGKSQEKGLELAVYISDSVPEMLIGDPGRFRQIITNLIGNSIKASNAFFCTAKKLFTEKGHIFVTVNLVEEVIESIDLEIESSTNSTLSGYPIANRRLSWAGFQTFSEERPSACHFMPSPPELINLMVSVEDTGVGIPLEAQSCVFTPFMQVRPSISRTHGGTGIGLSISKCLVGLMKGEIGFVSVPKIGSTFTFTAVFTKCSSNSSEYNKTQQIKNISIPTSSEFKGMRALIVDHRPIRAKVSRYHIQRLGINVEVLSDLNQCLSSSTISGSTINMIFVEQDLWDKDTSTSDLFIKNLRNSYGVPPKLFFLTTSISSSKASTIVSDVFTPTVILKPLRSGMLAASLHRVMGVGIKGNPRNGELPVLSLRNLLLGRKILVIDDNKVNRIVAAGALQRYGADVVCENSGREAIRLLTPPHHFDACFMDIQMPEMDGFEATRRIREIELQIKNGIQAGELSIEAYENKCDWGVPILAMTADVIQATHEECLKGGMNGYVSKPFEVERLYREVSQCFRRTSNGTL 1067
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9486488 9492568 - CmaCh17G014430.1 Cma17g01443 313338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01443 1067 Gene3D CHASE domain 175 404 IPR042240 -
Cma17g01443 1067 SMART CHASE_2 171 372 IPR006189 -
Cma17g01443 1067 PANTHER HISTIDINE KINASE 3 71 1061 - -
Cma17g01443 1067 SMART REC_2 921 1055 IPR001789 GO:0000160
Cma17g01443 1067 Gene3D - 122 174 - -
Cma17g01443 1067 Gene3D - 522 749 IPR036890 -
Cma17g01443 1067 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 443 524 IPR036097 GO:0000155|GO:0007165
Cma17g01443 1067 PANTHER TWO-COMPONENT HISTIDINE KINASE 71 1061 - -
Cma17g01443 1067 SMART HKATPase_4 570 746 IPR003594 -
Cma17g01443 1067 Pfam CHASE domain 174 370 IPR006189 -
Cma17g01443 1067 SMART HisKA_10 458 523 IPR003661 GO:0000155|GO:0007165
Cma17g01443 1067 CDD HisKA 458 519 IPR003661 GO:0000155|GO:0007165
Cma17g01443 1067 MobiDBLite consensus disorder prediction 1 26 - -
Cma17g01443 1067 ProSiteProfiles CHASE domain profile. 171 397 IPR006189 -
Cma17g01443 1067 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 570 745 IPR003594 -
Cma17g01443 1067 CDD HATPase_EvgS-ArcB-TorS-like 575 744 - -
Cma17g01443 1067 Coils Coil 435 455 - -
Cma17g01443 1067 CDD REC_hyHK_CKI1_RcsC-like 923 1055 - -
Cma17g01443 1067 Pfam Response regulator receiver domain 923 1054 IPR001789 GO:0000160
Cma17g01443 1067 SUPERFAMILY CheY-like 920 1061 IPR011006 -
Cma17g01443 1067 Gene3D - 921 1065 - -
Cma17g01443 1067 CDD PRTases_typeI 866 948 IPR000836 -
Cma17g01443 1067 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 512 741 IPR036890 -
Cma17g01443 1067 ProSiteProfiles Response regulatory domain profile. 922 1059 IPR001789 GO:0000160
Cma17g01443 1067 PRINTS Bacterial sensor protein C-terminal signature 689 699 IPR004358 GO:0016310|GO:0016772
Cma17g01443 1067 PRINTS Bacterial sensor protein C-terminal signature 706 724 IPR004358 GO:0016310|GO:0016772
Cma17g01443 1067 PRINTS Bacterial sensor protein C-terminal signature 671 685 IPR004358 GO:0016310|GO:0016772
Cma17g01443 1067 ProSiteProfiles Response regulatory domain profile. 775 896 IPR001789 GO:0000160
Cma17g01443 1067 SUPERFAMILY CheY-like 770 897 IPR011006 -
Cma17g01443 1067 Pfam His Kinase A (phospho-acceptor) domain 458 523 IPR003661 GO:0000155|GO:0007165
Cma17g01443 1067 Gene3D - 427 521 - -
Cma17g01443 1067 ProSiteProfiles Histidine kinase domain profile. 465 746 IPR005467 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02142 Cma-Chr4:14984183 Cma17g01443 Cma-Chr17:9486488 0 dispersed
Cma11g01285 Cma-Chr11:8585756 Cma17g01443 Cma-Chr17:9486488 0 dispersed
Cma15g00887 Cma-Chr15:4518099 Cma17g01443 Cma-Chr17:9486488 0 dispersed
Cma17g01443 Cma-Chr17:9486488 Cma20g00673 Cma-Chr20:3087195 0 dispersed
Cma19g00854 Cma-Chr19:8014444 Cma17g01443 Cma-Chr17:9486488 7.16E-07 dispersed
Cma17g01443 Cma-Chr17:9486488 Cma08g00179 Cma-Chr8:1008979 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36726 PF03924 CHASE 2.90E-37 CL0165 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01443 K14489 - csv:101216313 1828.14