Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00004 ATGGGGGATGCAATCAGTGGTGGATTTGGGGATGACCTGATGCTCAGACTCTCGCCGGAGATGAACGGAGAAACGAAGGTGTCTACCTCTGAACAACCGGACCTTACTCTTGGACTCTCTCTAGGGGGAATTTATTGTCCGAAATTGAAGGAAAGTTCGTTAACACGATCGTCTTCGGTTATTGGAGTGATTTCTCAGAACGCTGAGACGTGGAAATGGGATATGCAGGGGCAACAGCGTTCGTTTCTTTCGTTGGCGAGATCTTGTTCTTTTCCGGCCGAGACGGACCAACTGGGTCGGATTAAACTGAAGGAGTTGCAATTGATGAGGAGGATGGAGGCCAAAAAGAGACTGGCGGAGCAGAGGAGTGGCAGAGCAGCTGCGGCGGAGGATGAGAAGGCAGCGGCTGCACCGCCGTCTCCGTCTGAAGTGGCGGCTTGGGCTGCCGCTTCTGCAGCGAGAAGTCCAGCGTTCTATGACTTTATGATCAACTGGTTTTCAGGACATGGAAGTGTGGGATCAACTAAGGGGTCATCCACTTCACAGTCATCACTGGAGTCAAGTGACAGAGAGCCGCAAACAATGGCATCAAGAGAAAAACCAGGGACGAATGCAGCTAAGAGATGTAGAGTTTCCAAGGGATTGATGGAAGGGGATGGAGGGATGGATGTGATGCGAACGATGCCGAGCGTAACTACAATCGGGGATGGGCCAAACGGAAGGAAGATAGAAGGGTTTTTATACAAGTACATGAAGGGACAAGTTTGCATAGTGTGTGTGTGCCATGGAAGCTTTCTTACACCTGCAGAGTTTGTGAAACATGCTGGTGGGAGGGAAGTGGCCAACCCCATGAAGCACATTCACGTTTGCTGTACTTCATTTTCATTGTAA 891 50.28 MGDAISGGFGDDLMLRLSPEMNGETKVSTSEQPDLTLGLSLGGIYCPKLKESSLTRSSSVIGVISQNAETWKWDMQGQQRSFLSLARSCSFPAETDQLGRIKLKELQLMRRMEAKKRLAEQRSGRAAAAEDEKAAAAPPSPSEVAAWAAASAARSPAFYDFMINWFSGHGSVGSTKGSSTSQSSLESSDREPQTMASREKPGTNAAKRCRVSKGLMEGDGGMDVMRTMPSVTTIGDGPNGRKIEGFLYKYMKGQVCIVCVCHGSFLTPAEFVKHAGGREVANPMKHIHVCCTSFSL 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9878 11486 + CmaCh18G000040.1 Cma18g00004 313342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00004 296 PANTHER AFP HOMOLOG 2 11 295 IPR031307 GO:0007165
Cma18g00004 296 MobiDBLite consensus disorder prediction 117 140 - -
Cma18g00004 296 Pfam Putative nuclear localisation signal 85 187 IPR032310 -
Cma18g00004 296 Pfam Ethylene-responsive binding factor-associated repression 35 61 IPR012463 -
Cma18g00004 296 MobiDBLite consensus disorder prediction 172 207 - -
Cma18g00004 296 MobiDBLite consensus disorder prediction 172 191 - -
Cma18g00004 296 Pfam Tify domain binding domain 257 288 IPR032308 -
Cma18g00004 296 PANTHER NINJA-FAMILY PROTEIN AFP1 11 295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00004 - - - csv:101203065 377.096
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g01072 Cma18g00004 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01704 Cma-Chr4:8558766 Cma18g00004 Cma-Chr18:9878 5.26E-08 dispersed
Cma18g00004 Cma-Chr18:9878 Cma18g01103 Cma-Chr18:9025767 1.22E-34 dispersed
Cma18g00004 Cma-Chr18:9878 Cma13g01072 Cma-Chr13:8107810 2.85E-120 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g464 Blo04g00792 . . . . . . . Cmo13g01118 Cmo18g00004 . . . . . Cpe20g00076 . . . . . . . . . . . . . . . Cone2ag0797 Cone16ag0212 . . Lsi02g00120 Csa01g00602 Chy12g01496 Cme12g01938 . . . Bda14g00883 . Bpe15g00578 Bma03g00853 . Sed08g2122 . . Cma13g01072 Cma18g00004 Car13g00908 Car18g00002 . . Bhi08g01081 Tan05g2358 Cmetu12g0092 Lac10g0151 Hepe07g2460 . . Cla04g01152 Cam04g1210 Cec01g1721 Cco01g1766 Clacu04g1237 Cmu04g1216 Cre01g1512 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010318 1 1 1 1 1 1 2 1 1 0 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 2 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00004 Cma_Chr18 FPKM 21.415264 22.593185 76.075424 71.429604 20.495848 23.956745 21.11355 132.287766 138.522263 127.513748