Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00008 ATGAGGGGCATGGGAAGCCAGAGAGTTCCGCTGATTGATCGTGGGGGAGGGCGAAAGGGCCTTGGCACATCAGAAGATCGTCAGTTAACTGACCTGGAACATGGGGATGCTGTACCGCCTGCAAATGTGGGATTTGGCAGAGTACTTTCACTTGCAAAGCCTGAAGCGGGGAAATTGATAATTGCTACCATTGCTCTTCTGATTGCTTCCACGTCAAGTTTATTGATACCAAAATTTGGGGGAAAGATCATTGACATTGTATCTGGAGATATTGACACACCTGAACAGAAAAGCAAAGCTCTAAAGGAAGTCACAAACACCATTGTATACATCACATCGATCGTCTTAGTTGGTTCGGTGTGCTCAGCTATTCGAGCTTGGTTATTTTCTTCTGCTAGTGAGAGGGTTGTTGCTCGCTTAAGGAAGAATCTGTTCACTCATCTTCTTAATCAGGAAATAGCCTTCTTTGACATTACTCGAACAGGAGAACTTCTTAGTAGGCTATCTGAGGATACCCAAATCATTAAGAGTGCCGCAACTACCAATCTTTCTGAGGCCCTAAGAAATCTATCAACTGCATTAATCGGGCTGACCTTCATGTTTTCAACTTCTTGGAAGTTGACATTATTGGCTTTGGTTGTTGTTCCTGTCATTTCTGTGGCTGTTCGTAAATTTGGTCGCTATCTTCGTGAGCTTTCTCACAAGACACAAGCAGCTGCTGCTGTCTGTGCTTCAATTGCTGAGGAATCTTTTGGTGCCATACGCACTGTCAGATCTTTTGCTCAAGAATCGTACGAGATATCCCGGTACTCTCAGAAAGTCGAGGAGACATTGGAACTTGGACTCAAACAAGCTAAAGTGGTTGGATTGTTTTCTGGAGGTCTCTATGCAGCATCGACCTTATCTGTTATTATTGTTGTGATATATGGAGCTAATTTGACGATCAAAGGGTTCATGACTCCGGGAGCTCTGACATCTTTCATTCTTTATAGTTTAACAGTGGGAACCTCTGTATCTGGGTTGTCGGGATTATACACTGTGGCCATGAAAGCTGCTGGAGCTAGCAGGCGAGTTTTTCAGCTCCTGGATCGTGTATCAACAATGACAAATTCAGGAAATAAGTGTCCTATTGGTGATCAAGATGGAGAAGTTGAGTTGGACGATGTCTGGTTTGCATATCCTTCCCGCCCTAATCACACTGTGCTGAAGGGAATAACATTGAGATTGCAGCCTGGCTCAAAAGTAGCTCTCGTTGGTCCAAGTGGCGGTGGAAAAACCACCATAGCAAACCTGATTGAAAGATTCTATGATCCTAATAAAGGCCAGATTCTGATAAATGGGGTTCCTCTGGCAGAGATATCCCATGAACATTTGCACAAAAGGATCAGTATTGTCAGCCAGGAGCCTATTCTTTTCAACTGCTCCATAGAGGAGAATATAGCCTACGGTTTAGATGGCAAAGTTGATAGCATTGATGTAGAAAATGCTGCTAAAATGGCCAATGCACACGATTTCATATCAAACTTCCCTGAAAAGTATAAAACCCATGTTGGAGAACGTGGAGTAAGGCTGTCGGGTGGTCAGAAACAAAGAGTAGCTATAGCAAGAGCTCTTCTTATGAATCCAAGAATTCTCCTTTTGGATGAAGCCACAAGTGCTCTAGATGCTGAAAGTGAACACTTAGTACAGGATGCAATGGATTCTTTGATGAAAGGCAGGACCGTGCTCGTCATTGCGCATAGGCTATCCACCGTTAAGACAGCAGACACGGTGGCCGTTGTTTCTGGTGGTCAGATTGTTGAAAGCGGAACACACGAAGAGCTCCTTAGCAGGGATGGTGTCTACACTGCACTAGTGAGGAGGCAACTGCAAGATACGAAAACAACATAA 1890 44.13 MRGMGSQRVPLIDRGGGRKGLGTSEDRQLTDLEHGDAVPPANVGFGRVLSLAKPEAGKLIIATIALLIASTSSLLIPKFGGKIIDIVSGDIDTPEQKSKALKEVTNTIVYITSIVLVGSVCSAIRAWLFSSASERVVARLRKNLFTHLLNQEIAFFDITRTGELLSRLSEDTQIIKSAATTNLSEALRNLSTALIGLTFMFSTSWKLTLLALVVVPVISVAVRKFGRYLRELSHKTQAAAAVCASIAEESFGAIRTVRSFAQESYEISRYSQKVEETLELGLKQAKVVGLFSGGLYAASTLSVIIVVIYGANLTIKGFMTPGALTSFILYSLTVGTSVSGLSGLYTVAMKAAGASRRVFQLLDRVSTMTNSGNKCPIGDQDGEVELDDVWFAYPSRPNHTVLKGITLRLQPGSKVALVGPSGGGKTTIANLIERFYDPNKGQILINGVPLAEISHEHLHKRISIVSQEPILFNCSIEENIAYGLDGKVDSIDVENAAKMANAHDFISNFPEKYKTHVGERGVRLSGGQKQRVAIARALLMNPRILLLDEATSALDAESEHLVQDAMDSLMKGRTVLVIAHRLSTVKTADTVAVVSGGQIVESGTHEELLSRDGVYTALVRRQLQDTKTT 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 30009 34873 + CmaCh18G000080.1 Cma18g00008 313346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00008 629 CDD ABC_6TM_AtABCB27_like 62 358 - -
Cma18g00008 629 Gene3D ABC transporter type 1, transmembrane domain 109 381 IPR036640 GO:0005524|GO:0016021
Cma18g00008 629 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 3 626 - -
Cma18g00008 629 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 60 350 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma18g00008 629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 622 IPR027417 -
Cma18g00008 629 PIRSF ABC_prm/ATPase_B 21 629 - -
Cma18g00008 629 SMART AAA_5 411 604 IPR003593 -
Cma18g00008 629 Gene3D - 382 625 IPR027417 -
Cma18g00008 629 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 3 626 IPR039421 -
Cma18g00008 629 MobiDBLite consensus disorder prediction 19 33 - -
Cma18g00008 629 Pfam ABC transporter transmembrane region 59 336 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma18g00008 629 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 384 621 IPR003439 GO:0005524
Cma18g00008 629 MobiDBLite consensus disorder prediction 1 34 - -
Cma18g00008 629 CDD ABC_MTABC3_MDL1_MDL2 384 622 - -
Cma18g00008 629 ProSitePatterns ABC transporters family signature. 524 538 IPR017871 GO:0005524
Cma18g00008 629 Pfam ABC transporter 402 552 IPR003439 GO:0005524
Cma18g00008 629 SUPERFAMILY ABC transporter transmembrane region 47 363 IPR036640 GO:0005524|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00008 - - - csv:101206026 1124.0
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g01065 Cma18g00008 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00008 Cma-Chr18:30009 Cma18g00668 Cma-Chr18:6178799 9.99E-112 dispersed
Cma18g00771 Cma-Chr18:6844607 Cma18g00008 Cma-Chr18:30009 2.21E-94 dispersed
Cma02g01027 Cma-Chr2:6106745 Cma18g00008 Cma-Chr18:30009 6.73E-98 transposed
Cma20g00298 Cma-Chr20:1459972 Cma18g00008 Cma-Chr18:30009 6.85E-67 transposed
Cma13g01065 Cma-Chr13:8070943 Cma18g00008 Cma-Chr18:30009 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g451 . . . . . . . . Cmo13g01110 Cmo18g00009 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0217 . . Lsi02g00130 Csa01g00613 Chy12g01487 Cme12g01928 . . Bda11g01766 . . . . . . . . Cma13g01065 Cma18g00008 Car13g00901 . Cpe09g01165 . Bhi08g01071 . . Lac10g0176 Hepe07g2451 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008898 2 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00008 Cma_Chr18 FPKM 21.721363 23.390018 9.836786 10.296597 11.594472 12.569041 13.440673 14.652346 13.645059 15.896544