Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00012 ATGGGCTGCTCCTTTTCTGGCTTGAATGCTCTGTACGATGCTGTCAATGGCGGCGGAGACATTTGGATCAACGAGAATCGGTTTAGGATCGTGAGGCAGCTCGGAGAAGGTGGGTTTGCCTTTGTGTTTTTGGTCAAAGAGGTTATTTCCGACTCGTCTTCAGCCTCTGGCGGAGGTCTCGCCAAGAAATTGAAGGACCCATCTCGTCTTTCTGGTGATGGCACTTATGCTTTAAAAAAGGTACTGATTCAGAGCAGTGAACAATTGGAGCTGGTGAGGGAGGAGATACGTGTTTCGTCGCTTTTTAGTCATCCCAATCTACTTCCACTTCTTGACCATGCTATAATTGCAGTTAAGTCATCTACTGAAGGATCTGTAAAACATGAAGCCTACTTATTATTTCCAGTTCACTTGGATGGAACATTACTGGACAATGCCCAGACCATGAAGGCTAAGAAGGAATTCTTTTCTACTGTGGATGTCCTGGAAATATTTCGCCAGCTCTGTGCAGGGCTTAAGCATATGCACAGTAGTGAGCCTCCTTATGCACACAATGATGTGAAGCCTGGCAATGTTCTTTTAACTCATAGAAAAGGAAAGTCACCTCATGCAATATTGATGGATTTTGGCAGTGCTCGACCTGCTAGAAGTGAAATTCATTCTCGTTCAGAGGCACTCCAATTGCAGGAATGGGCATCTGAGCATTGTTCGGCACCTTTCCGAGCACCAGAGCTATGGGATTGTCCAAGCCATGCAGACATCGATGAGAGGACTGATATCTGGTCACTGGGATGTACTTTGTATGCAATAATGTATGGGGTATCTCCATTTGAGTATGCACTTGGAGAATCTGGTGGAAGCCTTCAATTGGCAATTGTAAATGCACAAATCAAATGGCCAGCAGGACCTAATCCTCCATATCCTGATGCTCTCCATCAGTTTATAAAATGGATGCTTCAGCCGCAGGCTGCAGTTCGACCTCGGATCGATGATATCGTCCTCCATGTTGACAAGTTGATTGCGAAGTTTTCTAATTAG 1038 45.18 MGCSFSGLNALYDAVNGGGDIWINENRFRIVRQLGEGGFAFVFLVKEVISDSSSASGGGLAKKLKDPSRLSGDGTYALKKVLIQSSEQLELVREEIRVSSLFSHPNLLPLLDHAIIAVKSSTEGSVKHEAYLLFPVHLDGTLLDNAQTMKAKKEFFSTVDVLEIFRQLCAGLKHMHSSEPPYAHNDVKPGNVLLTHRKGKSPHAILMDFGSARPARSEIHSRSEALQLQEWASEHCSAPFRAPELWDCPSHADIDERTDIWSLGCTLYAIMYGVSPFEYALGESGGSLQLAIVNAQIKWPAGPNPPYPDALHQFIKWMLQPQAAVRPRIDDIVLHVDKLIAKFSN 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 51874 55444 - CmaCh18G000120.1 Cma18g00012 313350

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00012 345 SUPERFAMILY Protein kinase-like (PK-like) 20 335 IPR011009 -
Cma18g00012 345 CDD STKc_16 27 341 - -
Cma18g00012 345 PANTHER - 1 344 - -
Cma18g00012 345 ProSiteProfiles Protein kinase domain profile. 28 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00012 345 ProSitePatterns Protein kinases ATP-binding region signature. 34 63 IPR017441 GO:0005524
Cma18g00012 345 Gene3D Transferase(Phosphotransferase) domain 1 138 343 - -
Cma18g00012 345 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 1 344 - -
Cma18g00012 345 Gene3D Phosphorylase Kinase; domain 1 13 135 - -
Cma18g00012 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Cma18g00012 345 SMART serkin_6 28 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00012 345 Pfam Protein kinase domain 74 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00012 K08856 STK16; serine/threonine kinase 16 [EC:2.7.11.1] - csv:101208936 662.529
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g00237 Cma18g00012 CCT
Cma10g00270 Cma18g00012 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00209 Cma-Chr1:947483 Cma18g00012 Cma-Chr18:51874 1.09E-30 dispersed
Cma11g00237 Cma-Chr11:1207021 Cma18g00012 Cma-Chr18:51874 3.45E-162 dispersed
Cma14g01027 Cma-Chr14:5410870 Cma18g00012 Cma-Chr18:51874 2.19E-29 dispersed
Cma18g00012 Cma-Chr18:51874 Cma14g01812 Cma-Chr14:12991373 9.05E-12 dispersed
Cma10g00270 Cma-Chr10:1202046 Cma18g00012 Cma-Chr18:51874 0 wgd
Cma13g01051 Cma-Chr13:7995368 Cma18g00012 Cma-Chr18:51874 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g405 Blo04g00805 . . . . Bpe13g00330 . . Cmo13g01093 Cmo18g00013 Cma10g00270 Cma11g00237 Car10g00253 Car11g00216 Sed08g0316 Cpe20g00098 Cpe04g01434 Bhi02g00043 Tan09g1986 Cmetu02g0105 . Hepe09g0303 . . . . . . . . . Cone2ag0779 Cone16ag0257 . Cone19ag0024 . . Chy12g01467 Cme12g01910 . . . Bda14g00898 . Bpe15g00560 Bma03g00873 . Sed08g2148 Cmo10g00288 Cmo11g00241 . Cma18g00012 . . . Cpe18g00727 Bhi08g01044 Tan05g2310 Cmetu12g2001 . Hepe07g2431 . . . . . . . . . Lsi06g01375 Csa01g00318 Chy02g02423 Cme02g01794
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002165 2 3 1 2 1 2 2 2 2 2 1 2 2 2 2 4 2 2 4 2 2 2 2 2 3 1 2 5 2 1 64
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69260 PF00069 Pkinase 4.00E-29 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00012 Cma_Chr18 FPKM 5.660272 5.215617 6.178946 5.756339 9.61545 8.115608 7.427613 3.645532 5.356415 4.464815