Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00013 ATGCGTTGGTTTGAAAATTGCATTAAAGCACGTCGGTTGTGGGAATTAGAGGATGGAGAAGAAGGTGGCGGCGGCGGCGGCGGCGGAGGGCAATCGGAGGCGGCGGTGGCAGCTGCAGAGATGGTGGAGGAATGGAAGGAGATGATAGTGGCATTCTGCGTGTCGTCGGTCATAGCCATCGCTACGGTATCCGTGCAGATAGAAAAAAAACTGCCTCGCGTGTTTAACTTTCTATCGCTCACTCTGTTGCTGTGTTTTGGTTTTGTGGCGTTTGGGAAGATGACCAAGTCCATTTTGAAAAGAGTGTCGCGGATTCTGTACTGTGTGGGCGGGGTTTTGGGTGTCACGGCGTTGTTCATAGCCACTGCAATTCCGTATGCCTCATATTTTCAGATCATCATCTTCCTCATTTACTTAATCTTCTGGTTGATGTTCGTGTTGGTCGCCCACAATCTCCCCCTCTTAAACCCTAGTAATAAAGATGGGGCGGAAGCCAGAATCCCGAGCAGACGCCCATATACGTCCTCCTCACAAATCCCTCTTAGCTCCGGCAGTTCTATTTCATCCAACCCAATGGTGAGTGACAGCGAAGCAGAGAAGTCGCATCTGAAGGACAAAGAAAAGGAGAAGAAGAAGCTGTTGGCTCTTGCACCAATTGCTAAACCCCTTGCCGGCAAGAAGCTCTGCAAGCGCACCCTAAAGCTTGTTCGTAAAGCTGCTGAATACAAGTGCTTGAAGCGGGGGGTGAAGGAGGTGGTCAAAAGCATAAGGCGCGGACAAAAAGGGTTTTGTGTAATAGCTGGAAACATATCCCCCATTGATGTGATCACTCATGTTCCAATCTTATGTGAAGAGGCAGACATTCGCTACGTTTATGTTCCTTCCAAGGAAGATCTTGCCAATGCCGGGTCGACCAAGAGGCCAACATGTTGTGTTCTGATACAAACTAAGCCAAACAAAGGGGAGCTTGGATCAACTGAACAAGAGAAACTCAAGGCTGAGTTTGACCAAGTTGTAGCAGAAGTATCGGAACTTACAAGTAGTATTTTCTGA 1053 48.43 MRWFENCIKARRLWELEDGEEGGGGGGGGGQSEAAVAAAEMVEEWKEMIVAFCVSSVIAIATVSVQIEKKLPRVFNFLSLTLLLCFGFVAFGKMTKSILKRVSRILYCVGGVLGVTALFIATAIPYASYFQIIIFLIYLIFWLMFVLVAHNLPLLNPSNKDGAEARIPSRRPYTSSSQIPLSSGSSISSNPMVSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCCVLIQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSIF 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 55761 60014 - CmaCh18G000130.1 Cma18g00013 313351

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00013 350 PANTHER - 193 349 - -
Cma18g00013 350 PRINTS High mobility group-like nuclear protein signature 231 246 IPR002415 GO:0003723|GO:0005730
Cma18g00013 350 PRINTS High mobility group-like nuclear protein signature 218 231 IPR002415 GO:0003723|GO:0005730
Cma18g00013 350 PRINTS High mobility group-like nuclear protein signature 248 258 IPR002415 GO:0003723|GO:0005730
Cma18g00013 350 PRINTS High mobility group-like nuclear protein signature 292 304 IPR002415 GO:0003723|GO:0005730
Cma18g00013 350 MobiDBLite consensus disorder prediction 166 193 - -
Cma18g00013 350 SUPERFAMILY L30e-like 211 323 IPR029064 -
Cma18g00013 350 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 193 349 - -
Cma18g00013 350 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 233 317 IPR004038 -
Cma18g00013 350 Gene3D - 210 346 IPR029064 -
Cma18g00013 350 PRINTS Ribosomal protein L7A/RS6 family signature 264 277 IPR018492 -
Cma18g00013 350 PRINTS Ribosomal protein L7A/RS6 family signature 290 304 IPR018492 -
Cma18g00013 350 PRINTS Ribosomal protein L7A/RS6 family signature 280 290 IPR018492 -
Cma18g00013 350 PRINTS Ribosomal protein L7A/RS6 family signature 245 259 IPR018492 -
Cma18g00013 350 MobiDBLite consensus disorder prediction 170 193 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00013 K11129 NHP2, NOLA2; H/ACA ribonucleoprotein complex subunit 2 - csv:101208691 261.922
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g01052 Cma18g00013 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01301 Cma-Chr5:9881733 Cma18g00013 Cma-Chr18:55761 1.42E-20 dispersed
Cma10g00553 Cma-Chr10:2542214 Cma18g00013 Cma-Chr18:55761 4.35E-20 dispersed
Cma12g01216 Cma-Chr12:9487705 Cma18g00013 Cma-Chr18:55761 1.42E-20 dispersed
Cma13g01052 Cma-Chr13:8000702 Cma18g00013 Cma-Chr18:55761 1.39E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g402 Blo04g00807 . . . . . . . . Cmo18g00014 . . . . . . . . . . . . . . . . . . . . . Cone2ag0778 . . Cone19ag0021 Lsi02g00149 Csa01g00634 . . . . . Bda14g00900 . Bpe15g00558 Bma03g00875 . . . . Cma13g01052 Cma18g00013 Car13g00885 . . . . . . . . . . Cla04g01124 Cam04g1178 Cec01g1690 Cco01g1737 Clacu04g1206 Cmu04g1185 Cre01g1483 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001753 8 0 3 5 2 3 0 2 3 2 4 3 1 0 3 0 3 0 2 3 2 0 0 1 3 1 1 4 1 0 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00013 Cma_Chr18 FPKM 27.74728 28.047565 17.473978 17.098484 42.870232 47.45137 42.25692 26.140461 27.294271 26.964911