Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00019 ATGAGATTTACAACGCCCCCGTGGGGAGGAAGAACAGACGAAAAGGAATCATTTGTTTTTAGAAAAATTAATCCGCACCCTCCATCCTCTCCAATTCAATTTGCAGTCGCCCTCTCTCAGTATTTGTTTCTCATCAACCCCGTTTGTCCACTTCACAATCGTCAAGAGAAGGAGAGAGTAATGGCGACAATATCCGAGAAATTTTCGGCTGATTTTGCGATGGGTGGGGTTGCCGCGATTGTGGCCAAAACTGCAGCCGCACCCATTGAAAGGGTCAAGCTTTTGTTGCAGAATCAGGGAGAGTTGTTAAAGAGAGGCCATCTCAAGAACCCATATCTGGGCATTCACGATTGTTTCAGAAGAGTTTTGAAAGAGGAAGGGATATTGTCGCTTTGGAGGGGAAATCAGGCCAACGTTATTCGATATTTCCCAACTCAGGCTTTCAACTTTGCGTTCAAAGGTTACTTCAAAACCAAACTTGGGCGCTCAAAAGAGAAGGATGGATACATGAAGTGGTTTGCTGGAAATGTTGCTTCAGGAAGTGCTGCAGGAGCATCTACGTCTTTGTTTCTGTATCATTTGGATTATGCACGTACTCGACTAGGCACGGATGCAAAGGACAGTGGCAGTAAGAGGCTGCCCCAGTTTAAAGGGCTGCTCGATGTCTACACAAAAACCTTGTCTACTGATGGGATTGTTGGTCTATACCGAGGATTTAGCGTTTCGATTGTGGGGATTACGCTGTACAGAGGCATGTATTTTGGGATTTACGACAGCTTGAAGCCTCTGGTTTTGGTTGGAAATTTTGAGGGTAACTTTGTTGCTAGTTTCTTATTGGGGTGGAGCATCACAACCTGTTCTGGGTTATGTGCATATCCTTTCGACACACTGCGACGAAGAATGATGCTTACCTCTGGACAAACCTTGAAGTACCGTAGCGCTCTTCATGCCTTCTCAGAGATCATTCGCCTCGAGGGTTTTCCTTCTCTTTTTCGAGGAGTCACTGCCAATATGCTTGCTGGTATTGCAGGGGCTGGTGTTCTTGCTGGTTATGATCAACTGCACGAAGTTGCGTGTAGACACGGTTACTCCTTTGGGGAACCTCAAATAGCCTCAAAATGA 1122 45.81 MRFTTPPWGGRTDEKESFVFRKINPHPPSSPIQFAVALSQYLFLINPVCPLHNRQEKERVMATISEKFSADFAMGGVAAIVAKTAAAPIERVKLLLQNQGELLKRGHLKNPYLGIHDCFRRVLKEEGILSLWRGNQANVIRYFPTQAFNFAFKGYFKTKLGRSKEKDGYMKWFAGNVASGSAAGASTSLFLYHLDYARTRLGTDAKDSGSKRLPQFKGLLDVYTKTLSTDGIVGLYRGFSVSIVGITLYRGMYFGIYDSLKPLVLVGNFEGNFVASFLLGWSITTCSGLCAYPFDTLRRRMMLTSGQTLKYRSALHAFSEIIRLEGFPSLFRGVTANMLAGIAGAGVLAGYDQLHEVACRHGYSFGEPQIASK 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 76002 78262 + CmaCh18G000190.1 Cma18g00019 313357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00019 373 ProSiteProfiles Solute carrier (Solcar) repeat profile. 171 263 IPR018108 -
Cma18g00019 373 PANTHER ADP,ATP CARRIER PROTEIN ER-ANT1 61 367 - -
Cma18g00019 373 Gene3D Mitochondrial carrier domain 69 363 IPR023395 -
Cma18g00019 373 ProSiteProfiles Solute carrier (Solcar) repeat profile. 271 357 IPR018108 -
Cma18g00019 373 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 61 367 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cma18g00019 373 ProSiteProfiles Solute carrier (Solcar) repeat profile. 66 159 IPR018108 -
Cma18g00019 373 SUPERFAMILY Mitochondrial carrier 67 354 IPR023395 -
Cma18g00019 373 PRINTS Adenine nucleotide translocator signature 68 80 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cma18g00019 373 PRINTS Adenine nucleotide translocator signature 112 133 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cma18g00019 373 PRINTS Adenine nucleotide translocator signature 145 157 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cma18g00019 373 PRINTS Adenine nucleotide translocator signature 171 184 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cma18g00019 373 PRINTS Adenine nucleotide translocator signature 276 292 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cma18g00019 373 Pfam Mitochondrial carrier protein 172 264 IPR018108 -
Cma18g00019 373 Pfam Mitochondrial carrier protein 67 162 IPR018108 -
Cma18g00019 373 Pfam Mitochondrial carrier protein 272 357 IPR018108 -
Cma18g00019 373 PRINTS Mitochondrial carrier protein signature 71 84 IPR002067 GO:0055085
Cma18g00019 373 PRINTS Mitochondrial carrier protein signature 84 98 IPR002067 GO:0055085
Cma18g00019 373 PRINTS Mitochondrial carrier protein signature 134 154 IPR002067 GO:0055085
Cma18g00019 373 PRINTS Mitochondrial carrier protein signature 186 204 IPR002067 GO:0055085
Cma18g00019 373 PRINTS Mitochondrial carrier protein signature 236 254 IPR002067 GO:0055085
Cma18g00019 373 PRINTS Mitochondrial carrier protein signature 280 302 IPR002067 GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00019 Cma-Chr18:76002 Cma19g00993 Cma-Chr19:8627086 3.69E-130 dispersed
Cma18g00019 Cma-Chr18:76002 Cma13g01057 Cma-Chr13:8027109 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00019 K05863 - csv:101207715 514.227