Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00020 ATGGGGAGAGGGAGAGTTGAGTTGAAGAGAATTGAGAACAAAATTAACAGGCAGGTTACTTTTGCCAAGAGGAGAAATGGGTTGCTCAAGAAAGCTTATGAACTCTCAGTTCTTTGCGATGCTGAAGTTGCTCTCATCATCTTCTCTAATCGTGGCAAGCTCTTTGAGTTTTCTGGTGGCTCTAGCATGACTAAGACGCTCGAGAAGTATCGAAGGTGTAGTTATGACATACGGGATGGTGCCCGCCACCTAAATAACAATGGGCAGCCACAGAGCTTTGATGATTACTTGAACCTAAAAGCCACAGTTGAATTCATGCAGCAATCTCAGAGAAACCTTTTGGGGGAAGATTTAGGACCGCTGAATGCCAAGGAACTTGAGCAACTTGAGCATCAATTGGAGACATCCTTGGAGCGCATTAGATCCACAAAGACACAAACCCTAATGGACCAGCTTGCAGAACTTCAACGCAAGGAGCATATGCTTGTTGAAGACAACCGAAGTTTAAGAAAGAAGCTGGAAGAAAGCAGCGCGCAAGTAGCGGCAGCCTCCGCGGCGTGGGGCTGGGAAGGCGGCGCGGGAGGACACAGCATGGACTATTCCAGCCGCATTGCTTCACAATCAGACGCCTTTTTCTACCCCATAACCCAACCCATACCCACTTTACAAATGGGGTACAATTCTGTTGGCTCAGTTGGATTGAGTAATAATAATAATAACAATAATAGGAACGTTGGAGCTCCACCCCAAAATGGCAATGGATTTCAGGAAGGGAATGAAGTGATCTTGGTTTTGTTGGTGGAAATGGGTCGGGGGCGAGTGCAGTTGAAGAGGATTGAGAACAAGATCAACCGCCAAGTTACTTTCTCTAAAAGAAGGTCCGGTTTGCTGAAGAAAGCCCATGAGATTTCAGTTCTTTGTGATGCCGAAGTTGCTCTTATTGTCTTCTCCACCAAGGGCAAGCTCTTTGAATACTCCACTGATTCTTGCATGGAGAAAATCCTGGAGCGCTATGAAAGGTACTCCTATGCAGAAAGGAGACTTATTGCAAATGATAACCAATCAAATGGAAATTGGAGTCTTGAACATGCAAAGCTGAAAGCCAGAGTAGAGGTTCTACAGAAAAACCACAGGCATTTCATGGGGGAAGATCTTGACTCCTTGACTCTAAAAGAGCTTCAAAATACTGAACAACAACTTGATTCTGCACTCAAACAAATAAGAGCTAGGAAGAACCAACTCATGCATGAATCCATTTCAGAGCTTCAGAAAAAGGACAAGGCCCTACAGGAGCAAAACAACATGTTAGCCAAGAAGATAAAAGAGAAGGAAAAAGCACAAGCTCAAAATCCACCATCGGAGCAGGAGCAGCAGTATAGCCATGGCGTTTCCCCGCTTCTCCTCCCTCAGCCATTCCCATCTCTTGCCATGACCACGACTTGCCCTTACCCATCCCACAGCACGAGAGACAAAGACGTGGCTGCCAACTACGATAGATCGGCAGCCCTCCTGCTGCCGTGGATGCTCGGGCACCACCTTGGTGACTAA 1548 46.38 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLFEFSGGSSMTKTLEKYRRCSYDIRDGARHLNNNGQPQSFDDYLNLKATVEFMQQSQRNLLGEDLGPLNAKELEQLEHQLETSLERIRSTKTQTLMDQLAELQRKEHMLVEDNRSLRKKLEESSAQVAAASAAWGWEGGAGGHSMDYSSRIASQSDAFFYPITQPIPTLQMGYNSVGSVGLSNNNNNNNRNVGAPPQNGNGFQEGNEVILVLLVEMGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILERYERYSYAERRLIANDNQSNGNWSLEHAKLKARVEVLQKNHRHFMGEDLDSLTLKELQNTEQQLDSALKQIRARKNQLMHESISELQKKDKALQEQNNMLAKKIKEKEKAQAQNPPSEQEQQYSHGVSPLLLPQPFPSLAMTTTCPYPSHSTRDKDVAANYDRSAALLLPWMLGHHLGD 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 80281 87343 - CmaCh18G000200.1 Cma18g00020 313358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00020 515 Coils Coil 152 186 - -
Cma18g00020 515 Gene3D - 281 354 IPR036879 GO:0003677|GO:0046983
Cma18g00020 515 PANTHER SERUM RESPONSE FACTOR HOMOLOG 269 464 - -
Cma18g00020 515 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 232 - -
Cma18g00020 515 Coils Coil 123 146 - -
Cma18g00020 515 Coils Coil 390 417 - -
Cma18g00020 515 MobiDBLite consensus disorder prediction 441 467 - -
Cma18g00020 515 MobiDBLite consensus disorder prediction 450 464 - -
Cma18g00020 515 Gene3D - 13 90 IPR036879 GO:0003677|GO:0046983
Cma18g00020 515 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 278 325 IPR002100 GO:0003677|GO:0046983
Cma18g00020 515 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma18g00020 515 ProSiteProfiles MADS-box domain profile. 269 329 IPR002100 GO:0003677|GO:0046983
Cma18g00020 515 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma18g00020 515 SMART madsneu2 269 328 IPR002100 GO:0003677|GO:0046983
Cma18g00020 515 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Cma18g00020 515 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 232 - -
Cma18g00020 515 Coils Coil 419 449 - -
Cma18g00020 515 ProSitePatterns MADS-box domain signature. 271 325 IPR002100 GO:0003677|GO:0046983
Cma18g00020 515 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma18g00020 515 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cma18g00020 515 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma18g00020 515 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma18g00020 515 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma18g00020 515 ProSiteProfiles K-box domain profile. 356 446 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma18g00020 515 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cma18g00020 515 Pfam K-box region 92 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma18g00020 515 Pfam K-box region 353 440 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma18g00020 515 CDD MADS_MEF2_like 270 344 IPR033896 GO:0000977|GO:0045944
Cma18g00020 515 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma18g00020 515 SUPERFAMILY SRF-like 270 359 IPR036879 GO:0003677|GO:0046983
Cma18g00020 515 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 269 464 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00108 Cma-Chr12:442992 Cma18g00020 Cma-Chr18:80281 6.11E-48 dispersed
Cma14g01148 Cma-Chr14:9009460 Cma18g00020 Cma-Chr18:80281 1.41E-56 dispersed
Cma17g01438 Cma-Chr17:9458518 Cma18g00020 Cma-Chr18:80281 5.84E-51 dispersed
Cma13g01058 Cma-Chr13:8032668 Cma18g00020 Cma-Chr18:80281 6.05E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36728 PF01486 K-box 4.30E-28 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00020 K09264 - sind:105156749 469.159