Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00036 ATGAATATTGCTGCTTCTCTATCTTCACTCGCCGCCCTGCGCCTTCCTATTTGTCTCCATTGTTTCCCAACCTTCAGAACACCCATTTCCTTCCCTTCTCTATCCTTAAATCCCCCAAGTTTGCATATCTTTTCGTCGATGACTTCTTCCATTACTGCGTCGATGTCCACTTCCTCACCTCTGGCCCCCGATCAGCTTGCTGTGGAGGAGAAGAAGCCCGCGCCGCCGCCGAAGCCATGGCTGATCGTTGGCCTTGGGAACCCCGGGAAGAAGTATGAACGCACTCGCCATAATGTAGGTTTTGAGATGCTGGATGCTGTTGCCGAGGTTGAAGGGATATCCATGAGTAGTGCTTCCTTCAAAGCTCTGATCGGGAAAGGTTTCATCGGGGATGTTCCTGTAATGCTTGCCAAGCCACAAACTTTCATGAATGCAAGTGGTGAGTCTGTTGGTGCTATTGTTTCCTACTATAAAATTCCATTGAAGCAAGTCCTTGTGATATTCGATGACTTAGATTTGCCTTTTGCCAAATTGCGGATGCTGCCAAAGGGTGGCCATGGAGGACATAATGGGATGAGGAGTATTATTGATCACTTGAAAGGCAGTCGTGATTTCCCTCGGTTAAGAATAGGCATTGGGCGCCCTCCCGGGAAAATGGATGCTGCGAACTTTGTTATGCGCCCCTTCAACAAACAAGAAAGAGAAGAGTTGGATTTTACAATGCAAGTCGGAGTAGACGCTATACGGATACTTTTGCTGGAGGGGTTTAACAAAAGTGCAACATTTGTCAACACCAACAAACCTCTGGAACAAATAGGCTGA 822 47.45 MNIAASLSSLAALRLPICLHCFPTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSPLAPDQLAVEEKKPAPPPKPWLIVGLGNPGKKYERTRHNVGFEMLDAVAEVEGISMSSASFKALIGKGFIGDVPVMLAKPQTFMNASGESVGAIVSYYKIPLKQVLVIFDDLDLPFAKLRMLPKGGHGGHNGMRSIIDHLKGSRDFPRLRIGIGRPPGKMDAANFVMRPFNKQEREELDFTMQVGVDAIRILLLEGFNKSATFVNTNKPLEQIG 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 138340 143242 - CmaCh18G000360.1 Cma18g00036 313374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00036 273 PANTHER PEPTIDYL-TRNA HYDROLASE 28 268 IPR001328 GO:0004045
Cma18g00036 273 TIGRFAM pth: aminoacyl-tRNA hydrolase 81 260 IPR001328 GO:0004045
Cma18g00036 273 Pfam Peptidyl-tRNA hydrolase 81 259 IPR001328 GO:0004045
Cma18g00036 273 ProSitePatterns Peptidyl-tRNA hydrolase signature 1. 92 105 IPR018171 GO:0004045
Cma18g00036 273 Gene3D - 67 266 IPR036416 GO:0004045
Cma18g00036 273 MobiDBLite consensus disorder prediction 55 74 - -
Cma18g00036 273 PANTHER PEPTIDYL-TRNA HYDROLASE CHLOROPLASTIC 28 268 - -
Cma18g00036 273 Hamap Peptidyl-tRNA hydrolase [pth]. 79 257 IPR001328 GO:0004045
Cma18g00036 273 SUPERFAMILY Peptidyl-tRNA hydrolase-like 79 264 IPR036416 GO:0004045
Cma18g00036 273 ProSitePatterns Peptidyl-tRNA hydrolase signature 2. 185 195 IPR018171 GO:0004045
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00036 K01056 PTH1, PTRH1, pth, spoVC; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] - csv:101211885 443.351
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00029 Cma-Chr18:115990 Cma18g00036 Cma-Chr18:138340 3.28E-72 proximal
Cma01g00403 Cma-Chr1:2045119 Cma18g00036 Cma-Chr18:138340 1.33E-74 transposed
Cma10g01004 Cma-Chr10:5233057 Cma18g00036 Cma-Chr18:138340 2.45E-71 transposed
Cma13g01034 Cma-Chr13:7903512 Cma18g00036 Cma-Chr18:138340 3.06E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g347 . Blo16g00141 . . . Bpe13g00341 Bma06g00002 . . Cmo18g00031 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00169 Csa01g00653 Chy12g01448 Cme12g01888 . . . Bda14g00913 . Bpe15g00544 Bma03g00889 . . . . . Cma18g00036 . Car18g00030 Cpe09g01144 . Bhi08g01217 Tan05g2282 . Lac10g0222 . . . Cla04g01104 Cam04g1157 Cec01g1667 Cco01g1713 Clacu04g1184 Cmu04g1164 Cre01g1462 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004590 1 5 0 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00036 Cma_Chr18 FPKM 1.824826 2.423935 6.327346 6.856613 5.471607 4.761526 6.460895 5.576513 5.591405 6.015808