Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00041 ATGGCCGGAAAGCAAGTTGCCAGCACTGGTCTACCGGAGAGCATCGCAGGAATGTCGAAGAACCAACTACATGATATTGTTAGACGAACACGACTCTACACAATGACTCTGATCGAACAGAATCAACAGCAGGCAAAGCAAATCCTAATCCAAAACCCCGCCTTGACCAAAGCTCTTTTTCAGGCGCAGATTATGCTTGGGATGGTGCGGCCTCCTCAGATTCCAAGCGTCAAGCCTTCAGCCCCACAGCATCCTCAGCCATCAACACAAACAACTCAACAGTCAAATACTCAGCCAACTCAAACATCAGCAAGTCAAATAAGTTTGCAAGAACAGACAGGGAACATCCAGCCTCAGTCAGCACCTCTGATTCCCCTGCAAACACTGCAGCATCCCAAGGGGTTTGAGATGCCCCAAGCGAATTCCATTTCCGTCTCACAGCCATCTCAAATTCCGAGTGTACCTCCGGTACCTCCATCTGCTGCTCAGCCACCTTTACTTCATCAACCCCCGATGTCAAGTGCTTCCATGCAGCTGCAGCAGCCATTACAAACAGCTGAAATTCCCCATCTGCCTCTACAGGCCCCATTGCCCCCACATTCCAGAGATCCTACGGGTCCAACTTTTCGTCAGCACTACCCCCCTCAAACGGGGCACAATATGAATTACCAACCTGCTCAACCCATGTTTCATTCAGGTTCCAAATTCCCTCCTGGTATAGGAAATTCATTTCCCCAGGACGGTCGCCACTTCCTAATCAACGACCCCCTCAGTCATTGTATCAGGTTGGTGAGTCCTGAGAGGAGCAGGGGCTTCTTTCTTTCAATTGGCTGTGAGGCTGGAGGTTCTAAAGTAGGTACAGAAGTCATGAATCAAGTTGGAACTTCAAAGCCTGTGGACAGAGGGCCTTGGATGCATGGCCCTCCAGATAATCCTACACTTCCACAGCAACTCTCAGGACCACCAGTAATACCATCAGGCACTGGCCAGATGGGCCCCGGCAATCAGCCTCGTCCTGCACCACCGTTGAGTCAGGAGATGGAGAAGATGCTACTTCAACAAGTCATGAGTCTCACACCAGAACAAATTAATCTCCTGCCTCCAGAGCAAAGGAGTCAAGTGCATCAGCTACAGAAGATGCTTCGCCAATAA 1152 50.17 MAGKQVASTGLPESIAGMSKNQLHDIVRRTRLYTMTLIEQNQQQAKQILIQNPALTKALFQAQIMLGMVRPPQIPSVKPSAPQHPQPSTQTTQQSNTQPTQTSASQISLQEQTGNIQPQSAPLIPLQTLQHPKGFEMPQANSISVSQPSQIPSVPPVPPSAAQPPLLHQPPMSSASMQLQQPLQTAEIPHLPLQAPLPPHSRDPTGPTFRQHYPPQTGHNMNYQPAQPMFHSGSKFPPGIGNSFPQDGRHFLINDPLSHCIRLVSPERSRGFFLSIGCEAGGSKVGTEVMNQVGTSKPVDRGPWMHGPPDNPTLPQQLSGPPVIPSGTGQMGPGNQPRPAPPLSQEMEKMLLQQVMSLTPEQINLLPPEQRSQVHQLQKMLRQ 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 161955 165004 + CmaCh18G000410.1 Cma18g00041 313379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00041 383 MobiDBLite consensus disorder prediction 72 115 - -
Cma18g00041 383 MobiDBLite consensus disorder prediction 83 115 - -
Cma18g00041 383 MobiDBLite consensus disorder prediction 323 343 - -
Cma18g00041 383 MobiDBLite consensus disorder prediction 139 182 - -
Cma18g00041 383 Pfam Transcription termination and cleavage factor C-terminal 351 383 IPR026896 GO:0031124
Cma18g00041 383 Gene3D - 343 383 IPR038192 -
Cma18g00041 383 MobiDBLite consensus disorder prediction 191 210 - -
Cma18g00041 383 Pfam Hinge domain of cleavage stimulation factor subunit 2 15 76 IPR025742 -
Cma18g00041 383 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 115 383 - -
Cma18g00041 383 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 1 119 - -
Cma18g00041 383 MobiDBLite consensus disorder prediction 151 166 - -
Cma18g00041 383 MobiDBLite consensus disorder prediction 167 182 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00041 - - - csv:101206596 480.715
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g01025 Cma18g00041 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00041 Cma-Chr18:161955 Cma15g00559 Cma-Chr15:2607663 6.50E-06 dispersed
Cma13g01025 Cma-Chr13:7853291 Cma18g00041 Cma-Chr18:161955 6.53E-159 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g320 . . . Bda15g00516 Bpe12g00691 . . . Cmo13g01066 Cmo18g00034 . . . . . Cpe20g00120 . . . . . . . . . . . . . . . . . . . Lsi02g00180 Csa01g00663 Chy12g01440 Cme12g01878 . . . . . . . Bma08g00062 Sed08g2180 . . Cma13g01025 Cma18g00041 Car13g00860 Car18g00035 Cpe09g01139 . Bhi08g01231 Tan05g2270 Cmetu12g1774 Lac10g0235 Hepe07g2394 . . Cla04g01094 Cam04g1145 Cec01g1655 Cco01g1704 Clacu04g1173 Cmu04g1154 Cre01g1449 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005289 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00041 Cma_Chr18 FPKM 0.0 0.438171 0.573702 1.17854 0.845012 0.692381 0.993828 0.385379 0.460019 0.303392