Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00042 ATGAGCAGAGCCGGCGGCCCAAGTGGCCGGAAGAGGGGTTTCTTCAATGGCGATGGTGCGGCCGAATTCTTCCTCCATTTAATGGTGGAGAAGCCTCTTCTTCCATTTCTGATACCGTTAGTTTTGATTGCTTGGAGTATTGAGAGATGGGTCTTCTCTTTCTCTAATTGGGTTCCTCTGGCTGTCGCCGTTTGGGCAACTTTGCAGTATGGGAGTTATCAACGCCGATTAGTTGTGGATGATTTGAACACAAAATGGAGGCGACTCGTAACGAACACCTCGCCTGAAACACCTTTGGAACCCTGTGCTTGGTTGAATAAGCTGTTGATGGAAGTATGGCCAAATTTTTTCAATCCAAAACTTTCCACGAAGCTTTCTTCCACAGTAAATAAACGATTGAGGGACCGAAACTCGAGGCTTATTGAAAAAATTGAACTGCTGGATTTTTCTCTTGGCTCATGCCCTCCTAGTTTGGGTCTTAGTGGGGCTCGATGGTCAACTTGTGGTGATGAGAGAATCATGCATTTGAGTTTCGATTGGGACACAAATGAAATGAGTATTTTGTTGCAAGCAAAACTGGCCAAGCCACTGATGGGAACTGCCCGGATTGTCATAAACAGCCTCCATATAAAGGGTGATCTTGTGTTGATGCCTATTTTGGATGGGAGGGCAGTTTTATTTTCATTTGTGACAACTCCTGATGTTAGAATAGGAGTTGCTTTTGGAAGTGGTGGAAGCCAATCATTACCTGCAACAGAGCTCCCTGGTGTTTCCTCCTGGCTGGTCAAAATTTTTACAGATACCCTGGTTAGGACAATGGTTGAACCACGCAGGCGTTGTTTCTCATTGCCATCTGTTGATCTGAGGAAAAAAGCTGTTGGTGGTATTATATATGCAACAGTCGTTTCTGCCAGAAAACTTTATAGAAGTAGTTTGAAGGGAAGCCCAACCAGAAGGCAACAAAGTTACTCTGCTAATGGTTCATTCGTAGAGCAGTTTACTGATAAAGATATGCAGACATTTGTTGAGGTCGAACTTGAAAAGCTTAGTAGAAAAACAGAAGCAAGATCAGGTTCAGACCCTCAGTGGAATACGACATTCAATATGATTTTACATGAAGATACAGGAACTCTACGGTTTCATCTTTATGAGTATCGTCCAAGTCATGTGAAGCATGATTATCTAGCAAGTTGTGAGGTTAAGATGAAATATGCTGCAGATGATTCCACTACATTTTGGGCAATAGGACCAGATTCCAGTGTAATAGCCAAGCATGCTGACTTTTGTGGAAAAGAAGTTGAAATGGTCATTCCATTTGAAGGAGCCCATTCTGGGGAGCTGACAGTAAGACTTGTTTTAAAGGAATGGATGTTCTCAGATGGTTCACATAGTTCTAACAGGTATCATGTTAGTCCACAACAATCTCTCAATGGGGCGTCGAGTTTTCTTTCTAGCACTGGAAGAAAAATTAACATCACAGTTGTGGAAGGGAAGGATCTACCCACAAAAGACAAGAATGGAAAGTGTGATCCGTATGTCAAATTGCAGTATGGAAAGGCTCTCCAGCGCACAAGAACTGCTCACTCCTTCAATCCAATATGGAATCAGAGGTTTGAATTTGATGAGATAGCTGGTGGTGAACATCTTAAGTTAAAATGCTTTACAGAAGACATTTTCGGGAATGATAACACTGGTAGCGCGAGGGTAAATCTAGAAGGATTAGCAGAAGGGTCAGTTAGAGATGTATGGATTCCTCTTGAAAAGGTGAATTCTGGAGAATTAAGGCTTCAAATAGAAGCCATCAGAATGGATGACAATGAAGGATCTAAGGGCTCAAGCTTGGGTCCAACAAATGGTTGGATAGAGCTTGTTCTAATTGAAGCAAAAGACCTTGTTGCTGCGGATATCAGAGGGACAAGTGATCCTTATGTGAGAGTCCAATATGGAAAGTTGAAGAAAAGAACCAAGGTTATGTACAAAACCCTGAGTCCCAAGTGGAATCAGATTTTGGAGTTTCCTGACAATGGCAGCCCATTGTTGTTACATGTCAAAGACCACAATGCTCTGCTCCCCACATCAAGCATCGGTGATTGTGTTGTGGAATATCAAGGGCTACCCCCAAACCAGATGTTTGACAAATGGATACCACTTCAGGGTGTCAAAAAGGGAGAGATACATATCCAAATCACCAAGAGAGTTCCAGAACTAGAGAAGAGAACTAGTCTGGATTCTGAAATTCCCTTCAGGAAAGCACATCAGATTTCCAGTCAGATGAAACAGATGATGAATAAGTTACAAAGTTTCATTGAAGACAGCAATCTTGAAGAACTTTCAACAACTGTGAGTGAGCTGGAAAGTCTAGAGGATCTGCAAGAAGAGTATATGGTACAGCTTGAAACAGAACAAATGCTTTTAATAAACAAGATTAAGGAACTTGGTCAGGAGTTTCTCAACTCATCCCCTTCCTTAAGCAGAAGATCATCTGGATACTAA 2493 42.08 MSRAGGPSGRKRGFFNGDGAAEFFLHLMVEKPLLPFLIPLVLIAWSIERWVFSFSNWVPLAVAVWATLQYGSYQRRLVVDDLNTKWRRLVTNTSPETPLEPCAWLNKLLMEVWPNFFNPKLSTKLSSTVNKRLRDRNSRLIEKIELLDFSLGSCPPSLGLSGARWSTCGDERIMHLSFDWDTNEMSILLQAKLAKPLMGTARIVINSLHIKGDLVLMPILDGRAVLFSFVTTPDVRIGVAFGSGGSQSLPATELPGVSSWLVKIFTDTLVRTMVEPRRRCFSLPSVDLRKKAVGGIIYATVVSARKLYRSSLKGSPTRRQQSYSANGSFVEQFTDKDMQTFVEVELEKLSRKTEARSGSDPQWNTTFNMILHEDTGTLRFHLYEYRPSHVKHDYLASCEVKMKYAADDSTTFWAIGPDSSVIAKHADFCGKEVEMVIPFEGAHSGELTVRLVLKEWMFSDGSHSSNRYHVSPQQSLNGASSFLSSTGRKINITVVEGKDLPTKDKNGKCDPYVKLQYGKALQRTRTAHSFNPIWNQRFEFDEIAGGEHLKLKCFTEDIFGNDNTGSARVNLEGLAEGSVRDVWIPLEKVNSGELRLQIEAIRMDDNEGSKGSSLGPTNGWIELVLIEAKDLVAADIRGTSDPYVRVQYGKLKKRTKVMYKTLSPKWNQILEFPDNGSPLLLHVKDHNALLPTSSIGDCVVEYQGLPPNQMFDKWIPLQGVKKGEIHIQITKRVPELEKRTSLDSEIPFRKAHQISSQMKQMMNKLQSFIEDSNLEELSTTVSELESLEDLQEEYMVQLETEQMLLINKIKELGQEFLNSSPSLSRRSSGY 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 165157 170981 - CmaCh18G000420.1 Cma18g00042 313380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00042 830 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 613 730 IPR035892 -
Cma18g00042 830 Gene3D C2 domain 466 602 IPR035892 -
Cma18g00042 830 Gene3D C2 domain 603 732 IPR035892 -
Cma18g00042 830 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 289 406 IPR035892 -
Cma18g00042 830 SMART C2_3c 489 583 IPR000008 -
Cma18g00042 830 SMART C2_3c 620 714 IPR000008 -
Cma18g00042 830 SMART C2_3c 296 414 IPR000008 -
Cma18g00042 830 Gene3D C2 domain 294 430 IPR035892 -
Cma18g00042 830 ProSiteProfiles C2 domain profile. 471 584 IPR000008 -
Cma18g00042 830 CDD C2 621 717 - -
Cma18g00042 830 CDD C2 490 586 - -
Cma18g00042 830 Coils Coil 795 815 - -
Cma18g00042 830 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 95 284 IPR031468 GO:0008289
Cma18g00042 830 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 488 600 IPR035892 -
Cma18g00042 830 ProSiteProfiles C2 domain profile. 602 715 IPR000008 -
Cma18g00042 830 PANTHER OS01G0128800 PROTEIN 11 828 - -
Cma18g00042 830 Pfam C2 domain 621 717 IPR000008 -
Cma18g00042 830 Pfam C2 domain 297 404 IPR000008 -
Cma18g00042 830 Pfam C2 domain 489 586 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00042 - - - csv:101213500 1511.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g00273 Cma18g00042 CCT
Cma11g00273 Cma18g00042 ECH
Cma13g01024 Cma18g00042 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00042 Cma-Chr18:165157 Cma09g00440 Cma-Chr9:1931051 7.56E-06 dispersed
Cma11g00273 Cma-Chr11:1376519 Cma18g00042 Cma-Chr18:165157 0 wgd
Cma13g01024 Cma-Chr13:7847124 Cma18g00042 Cma-Chr18:165157 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g316 Blo04g00823 . Bda06g00806 . . . . . Cmo13g01065 Cmo18g00035 . Cma11g00273 Car10g00217 Car11g00249 . Cpe20g00121 . . . . . . . . . . . . . . . . . Cone13ag0280 . Lsi02g00181 Csa01g00664 Chy12g01439 Cme12g01877 . Blo15g00070 . Bda14g00929 . Bpe15g00523 Bma03g00894 . Sed08g2181 Cmo10g00245 Cmo11g00278 Cma13g01024 Cma18g00042 Car13g00859 Car18g00036 Cpe09g01138 . Bhi08g01232 Tan05g2269 Cmetu12g1130 Lac10g0236 Hepe07g2393 . . Cla04g01093 Cam04g1144 Cec01g1654 Cco01g1703 Clacu04g1172 Cmu04g1153 Cre01g1448 . Csa01g00387 . Cme02g01738
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002821 1 3 2 1 1 1 4 1 2 1 1 2 3 2 2 3 2 1 2 1 2 2 2 2 2 1 2 3 2 2 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00042 Cma_Chr18 FPKM 6.246723 6.749418 2.941811 2.566448 7.578068 6.86987 8.268534 1.765095 1.918648 1.857623