Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma18g00043 | ATGGCTGCTGAGTTCACTCCAAACTTTCAGAGCTTAAAGCCATCACCTTTTCCTCTAATGGAAGCGGATTCCAACATTCCTGTTTTGTTCAATGACAGTTTCTTTTCCGACCACGCTGCTCCTCCCAGATTCCTGGAAAACCGTCGAGAAAATCTCCCAGAAATTTTCTCTCCAGCCAATCAGCTCGCTTCCCCTGTTTTTGAGCGCAAGAAAAGAAAGCTTGAAACTGACGCTTCTGCAAGCAGTTCTGGCAATTCATCTCCTCAGCGTTCTGAAACTGCGATCAACACTAAAAACAGCTCTGGAAGAGGAAAGCAGCCGGAAAAAGACAGGGAAGTGGCTCATGTTAGAGCCAAAAGAGGTCAAGCAACGGACAGCCACAGTATAGCTGAAAGGATAAGAAGAGGCAAAATCAACGAAAGATTGAGATGTTTGCAAGACATTGTCCCAGGATGTTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATTAATTATGTGCAGTCTTTGCAGAATCAAGTTGAGTTTCTTTCTATGAAACTCACAGCTGCAAGCTCCTATTATGACTTCAACTCAGACGAAGCATATGAACGAGCTTAG | 606 | 43.89 | MAAEFTPNFQSLKPSPFPLMEADSNIPVLFNDSFFSDHAAPPRFLENRRENLPEIFSPANQLASPVFERKKRKLETDASASSSGNSSPQRSETAINTKNSSGRGKQPEKDREVAHVRAKRGQATDSHSIAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSDEAYERA | 201 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 174590 | 175573 | - | CmaCh18G000430.1 | Cma18g00043 | 313381 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma18g00043 | 201 | SMART | finulus | 128 | 178 | IPR011598 | GO:0046983 | |
| Cma18g00043 | 201 | PANTHER | TRANSCRIPTION FACTOR BEE 1 | 54 | 195 | - | - | |
| Cma18g00043 | 201 | Pfam | Helix-loop-helix DNA-binding domain | 126 | 173 | IPR011598 | GO:0046983 | |
| Cma18g00043 | 201 | Gene3D | - | 119 | 190 | IPR036638 | GO:0046983 | |
| Cma18g00043 | 201 | MobiDBLite | consensus disorder prediction | 78 | 102 | - | - | |
| Cma18g00043 | 201 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 54 | 195 | IPR024097 | GO:0006355 | |
| Cma18g00043 | 201 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 120 | 190 | IPR036638 | GO:0046983 | |
| Cma18g00043 | 201 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 122 | 172 | IPR011598 | GO:0046983 | |
| Cma18g00043 | 201 | MobiDBLite | consensus disorder prediction | 103 | 131 | - | - | |
| Cma18g00043 | 201 | MobiDBLite | consensus disorder prediction | 71 | 131 | - | - | |
| Cma18g00043 | 201 | CDD | bHLH_AtBPE_like | 112 | 195 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma10g00230 | Cma18g00043 | CCT | |
| Cma11g00279 | Cma18g00043 | CCT | |
| Cma10g00230 | Cma18g00043 | ECH | |
| Cma11g00279 | Cma18g00043 | ECH | |
| Cma13g01023 | Cma18g00043 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma10g00230 | Cma-Chr10:1021588 | Cma18g00043 | Cma-Chr18:174590 | 2.57E-58 | dispersed | |
| Cma15g00915 | Cma-Chr15:4738386 | Cma18g00043 | Cma-Chr18:174590 | 9.93E-48 | dispersed | |
| Cma18g00043 | Cma-Chr18:174590 | Cma17g01290 | Cma-Chr17:8705244 | 4.72E-37 | dispersed | |
| Cma11g00279 | Cma-Chr11:1389994 | Cma18g00043 | Cma-Chr18:174590 | 1.18E-54 | wgd | |
| Cma13g01023 | Cma-Chr13:7841204 | Cma18g00043 | Cma-Chr18:174590 | 3.06E-88 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 36731 | PF00010 | HLH | 1.70E-05 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma18g00043 | - | - | cmax:111489917 | 394.045 |