Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00043 ATGGCTGCTGAGTTCACTCCAAACTTTCAGAGCTTAAAGCCATCACCTTTTCCTCTAATGGAAGCGGATTCCAACATTCCTGTTTTGTTCAATGACAGTTTCTTTTCCGACCACGCTGCTCCTCCCAGATTCCTGGAAAACCGTCGAGAAAATCTCCCAGAAATTTTCTCTCCAGCCAATCAGCTCGCTTCCCCTGTTTTTGAGCGCAAGAAAAGAAAGCTTGAAACTGACGCTTCTGCAAGCAGTTCTGGCAATTCATCTCCTCAGCGTTCTGAAACTGCGATCAACACTAAAAACAGCTCTGGAAGAGGAAAGCAGCCGGAAAAAGACAGGGAAGTGGCTCATGTTAGAGCCAAAAGAGGTCAAGCAACGGACAGCCACAGTATAGCTGAAAGGATAAGAAGAGGCAAAATCAACGAAAGATTGAGATGTTTGCAAGACATTGTCCCAGGATGTTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATTAATTATGTGCAGTCTTTGCAGAATCAAGTTGAGTTTCTTTCTATGAAACTCACAGCTGCAAGCTCCTATTATGACTTCAACTCAGACGAAGCATATGAACGAGCTTAG 606 43.89 MAAEFTPNFQSLKPSPFPLMEADSNIPVLFNDSFFSDHAAPPRFLENRRENLPEIFSPANQLASPVFERKKRKLETDASASSSGNSSPQRSETAINTKNSSGRGKQPEKDREVAHVRAKRGQATDSHSIAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSDEAYERA 201
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
18 174590 175573 - CmaCh18G000430.1 Cma18g00043 313381
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00043 201 SMART finulus 128 178 IPR011598 GO:0046983
Cma18g00043 201 PANTHER TRANSCRIPTION FACTOR BEE 1 54 195 - -
Cma18g00043 201 Pfam Helix-loop-helix DNA-binding domain 126 173 IPR011598 GO:0046983
Cma18g00043 201 Gene3D - 119 190 IPR036638 GO:0046983
Cma18g00043 201 MobiDBLite consensus disorder prediction 78 102 - -
Cma18g00043 201 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 54 195 IPR024097 GO:0006355
Cma18g00043 201 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 120 190 IPR036638 GO:0046983
Cma18g00043 201 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 172 IPR011598 GO:0046983
Cma18g00043 201 MobiDBLite consensus disorder prediction 103 131 - -
Cma18g00043 201 MobiDBLite consensus disorder prediction 71 131 - -
Cma18g00043 201 CDD bHLH_AtBPE_like 112 195 - -
       

Event-related genes


       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00230 Cma-Chr10:1021588 Cma18g00043 Cma-Chr18:174590 2.57E-58 dispersed
Cma15g00915 Cma-Chr15:4738386 Cma18g00043 Cma-Chr18:174590 9.93E-48 dispersed
Cma18g00043 Cma-Chr18:174590 Cma17g01290 Cma-Chr17:8705244 4.72E-37 dispersed
Cma11g00279 Cma-Chr11:1389994 Cma18g00043 Cma-Chr18:174590 1.18E-54 wgd
Cma13g01023 Cma-Chr13:7841204 Cma18g00043 Cma-Chr18:174590 3.06E-88 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36731 PF00010 HLH 1.70E-05 No_clan Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00043 - - cmax:111489917 394.045