Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00053 ATGGCGACCCTTTCGTTATCCCGTTTCGATCTCTCTTCCATCGGCCGGAGCGACAATCGCCGCCGTCACCTCCACCGATTCAGGCGACAAGGGAAATCGGAAGCCTCGTGGGCCTTATGCCGGCGGAATATGGTCGCCGTGAAGTCCGTCACAGCGTTTTACGGTGGCAATAAGGAGAAGGGTTCGATCTGTACTGCCGACGAGCTTCATTACGTCTCTGTTCCCAACTCTGATTGGAAGCTCGCTCTCTGGCGGTACAACCCTTCTCTTCAGGCGGCATCCAGAAATCATCCGCTTCTGCTGTTGTCAGGGGTCGGGAGCAACGCTCTTGGATATGACCTTTCTCCAGAGTCCTCATTCGCTCGCTACATGTCCAACCAAGGATACGACACTTGGATTCTTGAGGTTCGAGGGTCGGGACTGAGCACTCACAGAGTAGAAAGGAAGGATACTATTGGTCAGATAAGGTCAGAAACTCCGGAGAAACAGCCACTAGCTAAGATTGGTACATATTCCAGTTCTGAGGGTTCCAGCGTTTCTTCAAAACATGGACAGGAATCTACCATTGCTACTCAACTTGGGAACTGGAATAAGAATCTTATCAATATCATTGAAGGAGCTCAACAACTGGGTCCATTGAAGCCTTTTAATTTACAAGGTGTTACCTCTGCATTAGAAGACTTCCAGGAACAACTTGATGTGTATGAGAAGTATGACTGGGACTTCGACCACTACTTGGAAGAAGATGTACCTGCTGCGATGGAGTACATAAGGAACCAATCCAAACCGAACGATGGGAAGTTACTAGCTATCGGCCACTCGATGGGGGGTATCTTGCTATACGCAACGATCTCGCGCTGTAGCTTTAACAAAGTTGACCCGCAGTTGGCATCAGTTGTTACGTTGGCTTCATCGCTCGACTACAGACCTTCAAACTCATCACTCAGACTTCTGTTACCTTTGAGGGATCCCGCACAAGCTTTTAATGTTCCCGTGTTTCCCATCGGACCATTGCTTGCTATCGCTCATCCTCTTGCATCCCGACCTCCTTATCTCCTGTATTGGCTAAAGGATCAAATCTCTGTAGAAGACATGTTAGATCCCACCTTGCTCGAGAAGCTGGTGTTGAATGGCTTTGAATCTGTGCCGGCAAAGGTTCTCCTGCAGCTATCATCAGTTTTCGAAGAGGGGGGCTTACGTGACAGGAACGGGACGTTCCAGTACAATGACCATCTACGCCAAACCAATGTTCCAATCCTTGCCATTGCTGGAGACCAAGACCCCATTTGTCCACCTGAAGCGGTATACGAAACTGTGAAAGGAATTCCCAGGGAGTTTGTTTCCTACAGAGTTCTTGGGAAGCCTGGTGGTCCTCATTATTCTCACTATGATCTTGTGGGAAGTCGTTTGGCATCGAGTGACGTGTATCCGTTGATAACTGATTTTCTCAACCGTCATGATGTGGCTTGA 1470 48.78 MATLSLSRFDLSSIGRSDNRRRHLHRFRRQGKSEASWALCRRNMVAVKSVTAFYGGNKEKGSICTADELHYVSVPNSDWKLALWRYNPSLQAASRNHPLLLLSGVGSNALGYDLSPESSFARYMSNQGYDTWILEVRGSGLSTHRVERKDTIGQIRSETPEKQPLAKIGTYSSSEGSSVSSKHGQESTIATQLGNWNKNLINIIEGAQQLGPLKPFNLQGVTSALEDFQEQLDVYEKYDWDFDHYLEEDVPAAMEYIRNQSKPNDGKLLAIGHSMGGILLYATISRCSFNKVDPQLASVVTLASSLDYRPSNSSLRLLLPLRDPAQAFNVPVFPIGPLLAIAHPLASRPPYLLYWLKDQISVEDMLDPTLLEKLVLNGFESVPAKVLLQLSSVFEEGGLRDRNGTFQYNDHLRQTNVPILAIAGDQDPICPPEAVYETVKGIPREFVSYRVLGKPGGPHYSHYDLVGSRLASSDVYPLITDFLNRHDVA 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 220973 224133 - CmaCh18G000530.1 Cma18g00053 313391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00053 489 Pfam Alpha/beta hydrolase family 99 462 IPR000073 -
Cma18g00053 489 Gene3D alpha/beta hydrolase 68 155 IPR029058 -
Cma18g00053 489 Gene3D alpha/beta hydrolase 216 485 IPR029058 -
Cma18g00053 489 PANTHER LYSOSOMAL ACID LIPASE-RELATED 50 486 - -
Cma18g00053 489 SUPERFAMILY alpha/beta-Hydrolases 69 486 IPR029058 -
Cma18g00053 489 MobiDBLite consensus disorder prediction 160 186 - -
Cma18g00053 489 MobiDBLite consensus disorder prediction 166 186 - -
Cma18g00053 489 ProSitePatterns Prolyl endopeptidase family serine active site. 249 279 IPR002471 GO:0004252|GO:0006508
Cma18g00053 489 PIRSF UCP031088_abhydr 8 181 IPR016969 -
Cma18g00053 489 PIRSF UCP031088_abhydr 172 489 IPR016969 -
Cma18g00053 489 PANTHER ALPHA/BETA HYDROLASE FAMILY PROTEIN 50 486 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00053 - - - cmos:111457026 939.488
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00929 Cma-Chr15:4899027 Cma18g00053 Cma-Chr18:220973 7.92E-42 dispersed
Cma18g00053 Cma-Chr18:220973 Cma04g02079 Cma-Chr4:14149911 3.41E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g277 . Blo16g00128 . . . Bpe13g00365 . . . Cmo18g00043 . . . . . . . . . . . . . . . . . . . . . Cone2ag0742 . . . Lsi02g00213 Csa01g00695 Chy12g01416 Cme12g01852 . . . . . . . . Sed08g2743 . . . Cma18g00053 . Car18g00047 Cpe09g01127 . Bhi08g01263 Tan05g2228 Cmetu09g1201 Lac10g0266 Hepe07g2371 . . Cla04g01069 Cam04g1113 Cec01g1627 Cco01g1673 Clacu04g1139 Cmu04g1121 Cre01g1422 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007326 0 1 2 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 9 1 0 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00053 Cma_Chr18 FPKM 6.838563 7.361719 12.406613 12.130424 2.775717 2.581081 2.005016 4.786644 5.288371 5.634413