Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00055 ATGGGGAGCCCTGCACTGAATGGCCGGAATAATGGGCAGCGGTTAGGCATTACTGACCCCATTTCGTTGAGTGGACCGACGGAGGATGACGTGAGAAAGACTCGCGAACTTGAAAAGTATTTGCAAGATGCTGGATTGTACGAAAGTCAGGAGGAAGCCGTGAGTAGAGAGGAAGTTCTTGGAAGACTAGACCAGATTGTGAAGATTTGGGTTAAAGCAATTAGTCGTGCAAAGGGGTTGAATGAGCAACTGGTGCAAGAAGCAAATGCTAAGATTTTCACATTTGGTTCATATCGTTTAGGGGTGCATGGCCCTGGGGCAGACATTGATACACTCTGTGTGGGACCTAGGCATGCAACACGTGAAGAAGACTTTTTTGGTGAGTTACATAAAATGCTGTCAGAGATGCCTGAAGTATCTGAGTTGCACCCTGTGCCTGATGCTCATGTCCCTGTCATGAGATTTAAGTTTGCCGGGGTTTCTATTGATCTTCTCTATGCAAAATTGTCACTTTGGGTTATTCCTGAAGACTTGGATGTATCTCAGGACTCAATACTACAGAATGCAGATGAACAGACCGTTCGTAGTTTAAATGGTTGTCGAGTTACTGATCGAATTCTGCGATTAGTTCCAAATATTCAGAGTTTCCGAACAACATTGAGATGCATGAGGTTTTGGGCTAAACGCCGAGGTGTTTATTCCAATGTTTCTGGGTTCCTTGGTGGTATAAACTGGGCATTGCTCGTTGCTCGCATATGCCAACTATTCCCCAATGCATTGCCAAATATGCTTGTGTACCGTTTTTTCAGGGTCTTCACCCAGTGGCGCTGGCCTAATCCAGTCATGCTGTGTAGTAATGAAGAAGGATCTCTTGGACTTCCAGTTTGGGATCCTAGGAGAAATCCAAAGGATAGATACCATTTAATGCCCATCATTACTCCTGCTTATCCTTGCATGAACTCTAGCTACAATGTTTCTTCAAGCACCTTGCGTATTATGACTGAAGAATTTCAGAGGGGACATGACATTTGTGAGGTTATGGAAGAAAACAAGGCTGATTGGGATACGCTTTTTGAGCCTTACCCCTTCTTCGAAGCATACAAAAATTATTTACAAATAGACATTACTGCTGAAAATGCAGATGATCTAAGAAAGTGGAAAGGTTGGGTTGAATCTCGTCTCCGCCAACTGACATTGAAGATTGAGAGACATACGTATAACAAGCTTCAGTGCCATCCACATCCAGGCGATTTTTCTGATAAATCCAGACCTTTCCACCATTGTTATTTCATGGGTTTGCAGCGAAAACAAGGAGTTCCTGCAAGTGGAGGTGAACAGTTTGATATGAGGTTGACAGTTGAAGAATTTAAACATTCTGTCAATATGTATACACTGTGGAAGCCTGGGATGGAGATATATGTATCACATGTGAAAAAGAGGAATATACCAAATTTTGTTTTCCCAGGTGGAGTCCGACCTTCGCGTGCATCAAAAGTGACATGGGATAGCAGGCGTAGTTCAGAACTGAAAGCTTCTGACAGTGCTCAAGTAGACAGGCCATTTGAAGTTGCAGAAAGTATGGATGGAGTAGATGATAGAAGGAAAAGAATGCGTCTTGATGATAATGTAAATACTAACTCGAGAAATGGAGAATGCTTGGTTGTTGTTCATTCCCACCCTGAGGAAGTTCACGAAGTCAGCCAAGTCAGCACCACTAGCTCATGTTCCATTAAGGATTTGAATTCTACTCCTACAAGTGCAAATAACTTAGAAAATCTGGCAGATGTTTCCTCTCAGAATAATGGAGATCATGGATCCATGGAAGTTGATCATTCCACAAACATTGTATCTGCAGCTGCTGATACATCAAGCTGTAAAGCAGAGAAGCTGGCAATTCAAAAGATTCTGTCTGATTCATATGACTCTCACCAAGCTTTGTCTAGTGAGCTAGAAGAGCTCGACGATTTTGATTATAAAAATCAAGCTAAAGATTTTGGGGCCACTAAGCAAGGTAGCCCCTTGATGTCTTCGGTTGCCAACACATCTTCTGTGGTGCCTATGACATCTTGCAATGAAGCACGCCAGTCCTCAAGTTCATATTCCAATGGGGGCTTAGAGGAGCTTGAGCCTGCTGAGCTTGTGGCGCCATCGTCAACGGGGACCGCTCCTGCACCTGTAGCTGCCCGAAAGCCAATTATCAGGTTGAGCTTCACTTCCTTGGGCAAAGCTGGTAAAAGCTCACTGGAGCACTTGGTCGCGTGCAAGTTGCTTGTTCTTCATCACATGCTTCATGAGCTGAGTTCAAGTGGGATGGAAAGGAAACATCTTGAATATGTGTTGGTTCCGCTTGGTTTTGCGGTGCTGGTGAGCTACCATCTATGGTTGGCAGTCACCATTTACTGGAGACCGAAAAGAACAGTCATTGGAATCAACGCCGAATCCCGCCGGCAATGGGTCTCCACCATGATTTCAGATCCCATGAAGAATGGTGTTCTCGCAGTCCAAATCATACGAAACAATATCATGGCTTCCACGCTTATGGCCACGACAACAATCACCATTGGCTCGTTGCTTAGTGCTTTTGTAAGCAGCACATCAAGTACTGGAAAGTACCATTACATTGTACTGTGTTTCCTCGTTGCATTTCTTTGCAATGTGCAGTCTATTCGATACTATGCTCATGCCAGCTTCTTAGTCACTTTGCCTGCTGGTGAAAGCAGAATGGATTATTTTGCTGGAATCTTGAACCGGGGAAGCTTATTTTGGTCACTCGGACTGCGAGCTTTCTATTTTGCAATTCCTCTCTTCCTCTGGATCTTTGGACCTCTTTCAATGTTCTTGAGTTCCTGCCTTATAACATTTGTGCTTTACTTCTTGGACTTTACTAGAACTTCCAGCTATGATCCTTATGAATATCTGCAAAAGGAAGAAGTGAACAACAATGACATTGAATCTGTTGGTCAATCAAGGGGAAACAACTTCGCCGTAAGCTCCCGCCTTCACTCTCCTCTACTTGCAAGTTACAGTATGACCTCCAATTGCAATGATTCTGCAGATCAAAGCTGA 3066 43.8 MGSPALNGRNNGQRLGITDPISLSGPTEDDVRKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKAISRAKGLNEQLVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHKMLSEMPEVSELHPVPDAHVPVMRFKFAGVSIDLLYAKLSLWVIPEDLDVSQDSILQNADEQTVRSLNGCRVTDRILRLVPNIQSFRTTLRCMRFWAKRRGVYSNVSGFLGGINWALLVARICQLFPNALPNMLVYRFFRVFTQWRWPNPVMLCSNEEGSLGLPVWDPRRNPKDRYHLMPIITPAYPCMNSSYNVSSSTLRIMTEEFQRGHDICEVMEENKADWDTLFEPYPFFEAYKNYLQIDITAENADDLRKWKGWVESRLRQLTLKIERHTYNKLQCHPHPGDFSDKSRPFHHCYFMGLQRKQGVPASGGEQFDMRLTVEEFKHSVNMYTLWKPGMEIYVSHVKKRNIPNFVFPGGVRPSRASKVTWDSRRSSELKASDSAQVDRPFEVAESMDGVDDRRKRMRLDDNVNTNSRNGECLVVVHSHPEEVHEVSQVSTTSSCSIKDLNSTPTSANNLENLADVSSQNNGDHGSMEVDHSTNIVSAAADTSSCKAEKLAIQKILSDSYDSHQALSSELEELDDFDYKNQAKDFGATKQGSPLMSSVANTSSVVPMTSCNEARQSSSSYSNGGLEELEPAELVAPSSTGTAPAPVAARKPIIRLSFTSLGKAGKSSLEHLVACKLLVLHHMLHELSSSGMERKHLEYVLVPLGFAVLVSYHLWLAVTIYWRPKRTVIGINAESRRQWVSTMISDPMKNGVLAVQIIRNNIMASTLMATTTITIGSLLSAFVSSTSSTGKYHYIVLCFLVAFLCNVQSIRYYAHASFLVTLPAGESRMDYFAGILNRGSLFWSLGLRAFYFAIPLFLWIFGPLSMFLSSCLITFVLYFLDFTRTSSYDPYEYLQKEEVNNNDIESVGQSRGNNFAVSSRLHSPLLASYSMTSNCNDSADQS 1021
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 229486 238691 - CmaCh18G000550.1 Cma18g00055 313393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00055 1021 MobiDBLite consensus disorder prediction 583 609 - -
Cma18g00055 1021 PANTHER POLY A POLYMERASE 1 676 - -
Cma18g00055 1021 MobiDBLite consensus disorder prediction 1 30 - -
Cma18g00055 1021 Pfam Poly(A) polymerase predicted RNA binding domain 363 421 IPR007010 GO:0003723|GO:0043631
Cma18g00055 1021 MobiDBLite consensus disorder prediction 1 20 - -
Cma18g00055 1021 Gene3D - 16 358 - -
Cma18g00055 1021 CDD NT_PAP_TUTase 56 210 - -
Cma18g00055 1021 Gene3D Poly(A) polymerase predicted RNA binding domain 362 477 - -
Cma18g00055 1021 SUPERFAMILY PAP/OAS1 substrate-binding domain 211 360 - -
Cma18g00055 1021 Pfam Nucleotidyltransferase domain 81 164 IPR002934 GO:0016779
Cma18g00055 1021 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 361 487 IPR011068 GO:0003723|GO:0016779|GO:0031123
Cma18g00055 1021 Pfam Protein of unknown function, DUF599 779 963 IPR006747 -
Cma18g00055 1021 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 1 676 - -
Cma18g00055 1021 Pfam Poly(A) polymerase central domain 16 360 IPR007012 GO:0004652|GO:0043631
Cma18g00055 1021 SUPERFAMILY Nucleotidyltransferase 16 209 IPR043519 -
Cma18g00055 1021 Gene3D Beta Polymerase, domain 2 48 204 IPR043519 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00055 K14376 PAP; poly(A) polymerase [EC:2.7.7.19] - csv:101217340 1336.24
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00314 Cma18g00055 CCT
Cma13g01006 Cma18g00055 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00739 Cma-Chr8:4448208 Cma18g00055 Cma-Chr18:229486 0 dispersed
Cma13g01006 Cma-Chr13:7764047 Cma18g00055 Cma-Chr18:229486 1.27E-126 dispersed
Cma17g00760 Cma-Chr17:6130244 Cma18g00055 Cma-Chr18:229486 0 dispersed
Cma18g00119 Cma-Chr18:586109 Cma18g00055 Cma-Chr18:229486 2.22E-14 dispersed
Cma10g00314 Cma-Chr10:1425284 Cma18g00055 Cma-Chr18:229486 1.22E-77 wgd
Cma13g01005 Cma-Chr13:7757694 Cma18g00055 Cma-Chr18:229486 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g271 . . . Bda15g00501 Bpe12g00706 . . . Cmo13g01044 . Cma10g00314 . Car10g00297 . . . . Bhi02g00107 . . . Hepe09g0366 . . . . . . . . . Cone2ag0743 . . . Lsi02g00214 Csa01g00697 . Cme12g01850 Blo13g00182 . . . . . . Bma08g00044 Sed01g1749 Cmo10g00337 . Cma13g01006 Cma18g00055 Car13g00841 Car18g00049 . . Bhi08g01265 Tan05g2224 Cmetu12g0059 Lac10g0268 . . . . . . . . . . Lsi06g01308 Csa01g00407 Chy02g02337 Cme02g01711
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003713 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 5 4 4 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00055 Cma_Chr18 FPKM 6.4931 6.545022 7.424787 7.611193 4.807922 4.391316 4.83744 14.778141 13.67442 14.664911