Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00056 ATGGCGGCTCCCGCTGTGCCTCAGCCCCGATCCTCCAAAACTGAGTCTTACGTTGATAACAAGCGCAAGGAGGATATTCGCCAGGCCAATATCGTAGCAGCTCGAGCCATTGCTGATGCTGTTCGTACTAGTCTTGGGCCCAAGGGCATGGACAAGATGATCTCCACGGCTTCCGGTGAGGTCATCATTACTAATGACGGGGCGACCATTCTCAACAAAATGGAGGTTCTCCAACCTGCCGCGAAAATGCTCGTCGAGCTGTCGAAGTCGCAGGACTCTGCTGCTGGAGATGGTACGACCACTGTTGTCGTCATTGCAGGTTCTCTTCTTAAACAGTGTCTTTCTCTTTTGTCCCATGGGATTCACCCCACTGTAATCTCCGATTCCCTTCACAAGACCGCCATTAAGGCTGTTGATGTGTTGACAGCAATGGCTGTCCCAGTTGAGCTATCGGATAGAGAGTCGTTGATTAAATCGGCTAGTACATCGCTAAATAGTAAGGTTGTTAGTCAGTACTCGACACTGCTTGCGCCGCTTGCAGTCGATTCGGTGCTCTCGGTTGTTGATCCTTCTAAGCCTGATTTGGTAGATTTGAGGGATATTAAGATTGTGAAGAAGTTGGGCGGGACCGTGGATGACACTGTGCTTGTGAAGGGTTTGGTGTTTGACAAGAAGGTAAGTCATGCGGCTGGGGGACCGACTAGAATAGAAAATGCGAAGATTGCAGTAATTCAATTCCAGATTTCACCACCTAAGACTGACATTGAGCAGAGTATTATCGTTTCAGACTATACCCAGATGGATAGGATATTGAAAGAGGAGAGAAATTACATTTTGGGTATGATTAAGAAGATTAAGGCCACTGGATGTAACGTATTATTGATTCAGAAGAGTATCTTGAGAGATGCAGTGACAGATTTGTCACTACATTACCTTGCCAAAGCTAAGATTTTGGTGATTAAGGATGTTGAGCGCGACGACATTGAATTCATTACAAAGACTCTCAATTGTCTGCCAATTTCCAATATTGAACATTTCCGCTCTGAGAAGTTGGGGTATGCAGATATTGTTGAGGAGGCTTCAATGGGTGACGGAAAGATTGTTAAGATTACGGGCATTAAGGATATGGGACGGACAGCTACTGTACTTGTTCGGGGATCAAACCAACTAGTGATTGACGAGGCTGAGCGGAGCTTGCATGATGCCCTTTGTGTTGTTAGGTGTTTAGTAAATAAAAGATTCTTGATTGCAGGTGGTGGTGCACCAGAGATTGAGCTGTCCAGGCAGCTGGGTGCCTGGGCAAAAGTGTTGCATGGAATGGAGGGTTACTGTGTTCGTTCCTTTGCAGAGGCTCTTGAAGTTATCCCATATACGTTGGCTGAAAATGCTGGGTTGAATCCGATCACAATTGTTACAGAACTGAGGAATCGCCATGCTCAGGGTGAGATCAATACTGGAATCAATGTAAGGAAGGGGCAGATCACAAACATCTTGGAGGAGAATGTGGTTCAGCCACTACTTGTAAGTACAAGTGCAATCACTCTAGCAACAGAATGTGTTCGAATGATTATGAAGATTGATGACATTGTCACAGTGAGATAG 1602 45.76 MAAPAVPQPRSSKTESYVDNKRKEDIRQANIVAARAIADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGSLLKQCLSLLSHGIHPTVISDSLHKTAIKAVDVLTAMAVPVELSDRESLIKSASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPSKPDLVDLRDIKIVKKLGGTVDDTVLVKGLVFDKKVSHAAGGPTRIENAKIAVIQFQISPPKTDIEQSIIVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKAKILVIKDVERDDIEFITKTLNCLPISNIEHFRSEKLGYADIVEEASMGDGKIVKITGIKDMGRTATVLVRGSNQLVIDEAERSLHDALCVVRCLVNKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCVRSFAEALEVIPYTLAENAGLNPITIVTELRNRHAQGEINTGINVRKGQITNILEENVVQPLLVSTSAITLATECVRMIMKIDDIVTVR 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 241922 243523 - CmaCh18G000560.1 Cma18g00056 313394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00056 533 Gene3D - 147 413 IPR027410 -
Cma18g00056 533 Pfam TCP-1/cpn60 chaperonin family 37 531 IPR002423 GO:0005524
Cma18g00056 533 SUPERFAMILY GroEL-intermediate domain like 152 412 IPR027410 -
Cma18g00056 533 ProSitePatterns Chaperonins TCP-1 signature 1. 42 54 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Cma18g00056 533 CDD TCP1_delta 19 532 IPR012717 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Cma18g00056 533 Gene3D GroEL 218 377 IPR027409 -
Cma18g00056 533 ProSitePatterns Chaperonins TCP-1 signature 3. 91 99 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Cma18g00056 533 TIGRFAM chap_CCT_delta: T-complex protein 1, delta subunit 19 532 IPR012717 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Cma18g00056 533 PANTHER CHAPERONIN 13 531 IPR017998 GO:0140662
Cma18g00056 533 SUPERFAMILY GroEL apical domain-like 213 386 IPR027409 -
Cma18g00056 533 MobiDBLite consensus disorder prediction 1 21 - -
Cma18g00056 533 PANTHER T-COMPLEX PROTEIN 1 SUBUNIT DELTA 13 531 - -
Cma18g00056 533 Gene3D - 34 530 IPR027413 -
Cma18g00056 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 39 55 IPR017998 GO:0140662
Cma18g00056 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 61 79 IPR017998 GO:0140662
Cma18g00056 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 91 110 IPR017998 GO:0140662
Cma18g00056 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 381 403 IPR017998 GO:0140662
Cma18g00056 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 415 427 IPR017998 GO:0140662
Cma18g00056 533 SUPERFAMILY GroEL equatorial domain-like 20 531 IPR027413 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00056 K09496 CCT4; T-complex protein 1 subunit delta - csv:101217571 985.711
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01730 Cma-Chr6:10584503 Cma18g00056 Cma-Chr18:241922 1.28E-68 dispersed
Cma10g00986 Cma-Chr10:5109797 Cma18g00056 Cma-Chr18:241922 2.44E-87 dispersed
Cma12g00045 Cma-Chr12:168630 Cma18g00056 Cma-Chr18:241922 3.96E-100 dispersed
Cma13g00071 Cma-Chr13:561448 Cma18g00056 Cma-Chr18:241922 1.24E-95 dispersed
Cma14g01096 Cma-Chr14:7837833 Cma18g00056 Cma-Chr18:241922 4.93E-66 dispersed
Cma20g01048 Cma-Chr20:7788583 Cma18g00056 Cma-Chr18:241922 3.80E-68 dispersed
Cma18g00056 Cma-Chr18:241922 Cma05g00055 Cma-Chr5:218821 1.76E-104 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g262 Blo04g00835 Blo16g00127 . . . Bpe13g00366 Bma06g00054 . Cmo13g01041 . . . . . . Cpe20g00139 . . . . . . . . . . . . . . . . . . . Lsi02g00217 Csa01g00699 Chy12g01413 Cme12g01847 . . Bda11g01779 . . Bpe15g00534 . . Sed02g0902 . . . Cma18g00056 . . Cpe09g01125 . Bhi08g01269 Tan05g2218 Cmetu05g1284 Lac10g0271 Hepe07g2368 . . Cla04g01064 Cam04g1107 Cec01g1621 Cco01g1668 Clacu04g1132 Cmu04g1116 Cre01g1417 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008900 2 1 2 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 2 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00056 Cma_Chr18 FPKM 67.603622 70.828995 67.925308 72.915489 80.543159 82.620735 79.037247 97.362717 98.838257 99.940048