Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00058 ATGGATATCGAGGAGGATATTCGTGCATTAGAACTTGATTCACCAGATGTTAATGGTGTTCCTAAACCAGATGAAAAGATGGAAGATATTGTGAAATCCGACAATGTTGAAGAAGATGCAAAGACAGAAGATATTGAGAAGTCCGATAAAATGGAAGAAGAGTGGACAGAGGACCATCCTCAATCGGCCCAAGATATCCACGTTGAAGAACAAGTGGAGGAGAGCATATCTGCAAAGGAGAAGGAAGTTTCTTCGACTGTAAATGAGGATGAAGGGGATTTGGAAACGGATCGCAAAAGACACTTGAACGTTGTGTTCATTGGTCATGTTGATGCTGGTAAGTCTACAATTGGTGGTCAGATACTTTTCCTTAGCAATCAGGTTGACGAGCGTACGATCCAAAAGTATGAAAAAGAAGCAAAGGATAAAAGCAGAGAAAGCTGGTATATGGCATATATCATGGACACAAATGAAGAGGAGAGAGTCAAGGGGAAAACTGTTGAAGTGGGAAGAGCACATTTTGAAACTGAGACCACAAGGTTTACAATTTTGGATGCTCCAGGTCACAAAAGTTATGTCCCAAATATGATCAGTGGGGCATCTCAAGCTGATATAGGGGTTCTGGTAATTTCTGCTAGGAAAGGAGAGTTTGAAACTGGATACGAGAGAGGTGGACAAACTCGTGAGCATGTTTTGCTGGCAAAAACATTGGGTGTTGCGAAGCTTCTCGTTGTAGTGAATAAGATGGATGAACCCACAGTCAAATGGTCCAAAGAAAGGTATGAGGAGATAGAGTCTAAGATGGCACCCTTCTTAAAGTCATCTGGTTACAATGTAAAGAAAGATGTCCAATTTTTACCTATATCTGGTCTTCATGGTATTAACATGAAAGCAAGAGTGGATAAGAAAGTATGCCCGTGGTGGAATGGTCCGTGCTTGTTTGAAATCCTTGATACGATTGAAGGTCCACCAAGAAATCCAAAAGATCCATTTAGGATGCCCATCATCGACAAATTCAAGGACATGGGAACGACTGTCATGGGTAAAGTTGAATCTGGCACTGTGCGTGAGGGTGATTCCTTATGGGTAATGCCAAATAAGACTCAGGTGAAAGTTGCTACTGTGATGTGTGATGAAAATAAAGTTAAGTGGGCAGGACCTGGCGAAAATCTTCGTGTTAGAATAACTGGAATTGAAGAAGAAGAAATAACGTCTGGGTTTGTACTATCAAGCGTTGCAAAACCAATAGCCGCTGTTTCTGAGTTTGTTGCGCAGTTGCAGATTCTTGAGCTGCTGGATAATGCAATATTTACAGCTGGATATAAGGCCGTACTTCACATTCATGCTGTTGTTGAAGAATGTGAGATCATAGAGCTGCTACATCAGATTGATCCGAAGACTAGGAAACCCATGAAAAAGAAAGTTCTCTTTGTAAAAAATGGTGCAGTTATTTTGTGCCGCATCCAGGTCAATAACTTGATCTGTATTGAGAAGTTCTCTGATTTTCCTCAGCTTGGAAGATTTACACTTCGGACTGAAGGGAAGACAGTTGCCGTAGGAAAGGTCACTGATATTCCGGCTGCAACCAATTAA 1593 41.37 MDIEEDIRALELDSPDVNGVPKPDEKMEDIVKSDNVEEDAKTEDIEKSDKMEEEWTEDHPQSAQDIHVEEQVEESISAKEKEVSSTVNEDEGDLETDRKRHLNVVFIGHVDAGKSTIGGQILFLSNQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVLLAKTLGVAKLLVVVNKMDEPTVKWSKERYEEIESKMAPFLKSSGYNVKKDVQFLPISGLHGINMKARVDKKVCPWWNGPCLFEILDTIEGPPRNPKDPFRMPIIDKFKDMGTTVMGKVESGTVREGDSLWVMPNKTQVKVATVMCDENKVKWAGPGENLRVRITGIEEEEITSGFVLSSVAKPIAAVSEFVAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIIELLHQIDPKTRKPMKKKVLFVKNGAVILCRIQVNNLICIEKFSDFPQLGRFTLRTEGKTVAVGKVTDIPAATN 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 245718 253891 - CmaCh18G000580.1 Cma18g00058 313396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00058 530 CDD EF1_alpha 103 324 - -
Cma18g00058 530 Gene3D Translation factors 328 413 - -
Cma18g00058 530 PRINTS GTP-binding elongation factor signature 103 116 IPR000795 GO:0003924|GO:0005525
Cma18g00058 530 PRINTS GTP-binding elongation factor signature 182 192 IPR000795 GO:0003924|GO:0005525
Cma18g00058 530 PRINTS GTP-binding elongation factor signature 198 209 IPR000795 GO:0003924|GO:0005525
Cma18g00058 530 PRINTS GTP-binding elongation factor signature 242 251 IPR000795 GO:0003924|GO:0005525
Cma18g00058 530 Coils Coil 126 146 - -
Cma18g00058 530 CDD eRF3_II 330 411 - -
Cma18g00058 530 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 99 328 IPR000795 GO:0003924|GO:0005525
Cma18g00058 530 Pfam Elongation factor Tu GTP binding domain 99 315 IPR000795 GO:0003924|GO:0005525
Cma18g00058 530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 334 IPR027417 -
Cma18g00058 530 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 155 170 IPR031157 -
Cma18g00058 530 PANTHER TRANSLATION FACTOR 2 521 - -
Cma18g00058 530 Gene3D - 74 322 IPR027417 -
Cma18g00058 530 SUPERFAMILY Translation proteins 323 415 IPR009000 -
Cma18g00058 530 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 420 525 IPR009001 -
Cma18g00058 530 Pfam Elongation factor Tu domain 2 343 409 IPR004161 GO:0005525
Cma18g00058 530 MobiDBLite consensus disorder prediction 1 95 - -
Cma18g00058 530 Gene3D Translation factors 417 526 - -
Cma18g00058 530 CDD eRF3_C_III 418 525 - -
Cma18g00058 530 MobiDBLite consensus disorder prediction 8 95 - -
Cma18g00058 530 Pfam Elongation factor Tu C-terminal domain 415 525 IPR004160 -
Cma18g00058 530 PANTHER BNAA06G12300D PROTEIN 2 521 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00058 K03267 ERF3, GSPT; peptide chain release factor subunit 3 - csv:101217809 896.345
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g01003 Cma18g00058 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00102 Cma-Chr17:495733 Cma18g00058 Cma-Chr18:245718 3.94E-92 dispersed
Cma18g00058 Cma-Chr18:245718 Cma20g00474 Cma-Chr20:2285299 1.57E-92 dispersed
Cma13g01003 Cma-Chr13:7739614 Cma18g00058 Cma-Chr18:245718 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g246 Blo04g00839 Blo16g00126 . . . Bpe13g00367 Bma06g00055 . Cmo13g01039 Cmo18g00045 . . . . . Cpe20g00140 . . . . . . . . . . . . . . . . . . . Lsi02g00219 Csa01g00700 Chy12g01412 Cme12g01846 . . Bda11g01780 . . Bpe15g00536 Bma03g00904 . Sed08g2749 . . Cma13g01003 Cma18g00058 Car13g00838 Car18g00051 Cpe09g01124 Cpe18g00872 Bhi08g01272 Tan05g2214 Cmetu12g0241 Lac10g0273 . . . Cla04g01062 Cam04g1105 Cec01g1619 Cco01g1666 Clacu04g1130 Cmu04g1114 Cre01g1415 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004032 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00058 Cma_Chr18 FPKM 54.433414 60.124794 71.050179 74.256905 58.788673 59.12077 62.796101 115.288498 111.079544 115.280235