Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00063 ATGGTTCTGCAGGGCGAGAAGCACTCAGAATTTTTCACAGAGTATGGAGAAGGAAGCCGATACGATATTCAGGAAGTGATTGGGAAAGGAAGCTACGGAATTGTTGGTTCTGCAATTGACACCCAAACTGGTGAAAGGGTTGCTATCAAGAAAATTCATGATGTTTTTGAGCATGTATCTGATGCCATACGCATCCTAAGAGAAATTAAGCTCCTCCGGATGCTCCATCATCCGAACATTGTAGAGATAAAACATATCATGCTTCCTCCCTCACAGCGAGAATTTAAAGATATTTATCTTGTTTTTGAGTTGATGAAGACTGATCTTCACCACGTAATTAAGGAAAATAATGATCTTTCTGCCAAGCAGCATAAATTTTTCTTGTACCAGCTTCTTAGTGGCCTAAAATATATACATGCCGCAAATGTTCTTCATCGAGATTTGAAGCCAAAAAACATACTTGCTAATACTGACTGCAAACTGAAGATATGTGATTTTGGACTAGCTCGAGTATCTTTCAGTGATGCGCCATCTACTATTTTCTGGACATATACCCCTGCTATAGATATTTGGAGTATCGGATGCATATTTGCAGAAATGCTTTCGGGAAAACCTTTGTTTCCTGGAAAAAATGTGGCTCACCAGTTAGATTTAATTACCGATCTGTTTGGAACTCCTGATGCTGAATCCGTAGCGAAGATTAGGAATGAAAAGGCAAGAAGGTACCTGGGAAACATGCGTAAGAAAACACCAGTTCCATTCTCACGAAAGTTTCCTAATGCTGACCCATTGGCACTTCGTTTACTGGAACGCCTCCTGGCATTTGATCCCAAACATCGTCTAACTGCTGCAGAGGCACTTACGGATTCTTACTTCAATGATATAAAGAAAGCAGAAATTGAACCTTCTATTCAACCAATTTCAAAGCTTGAGTTTGACTTTGAGAGAAAGAGATTAACAAAAGATGATGTTAGAGAGTTAATTTATGCAGAGATTTTAGAGTATCATCCCGAAATGTGTCAGGAGGGCCTACACGATGGAGGTCAATCTACCTTTATCTATCCAAGTGGCGTTGATCGATTTAAACTTCAGTTTGCGCATCTGGAAGAGAACTTCAGCAAAGGTCAAAGAAGTGCTCCACTTCAAAGGCAGAACGTTTCCTTACCTCGGGAGCGGGTTACTCCACCCGAGCACAAGAACGCTGAGCATAACAATGATTTTGGAAGGGGGGAAGAGAAGAGTGCCCACCTCTTCAAAAGTGCTAGCATTAGTGCATCGAGGTGTGTAGGGGTAATACCGAAGGAGAAGTCTGAGGAGGAAGAAACGAGTTCTGAGGTCAAAAGTGAAGCAGTTGATGAATCGACTCAAAAGATTGCAGTCCTTCAGAGGCATGGGGTGAAGCAACTAAGAACAGGATGGGCAGATGGTCCAGCTTACATAACACAGTGTCCTATCAGAGCTGGTGAATCATACACATACAAGTTCTCAGTGAATGATCAAAGAGGGACACTATGGTGGCATGCACATAATTCATGGCAACGAGCTTCTGTGCATGGTGCCTTCATCATTTACCCTCGCATGCCTTACCCATTCTCCTCTACTCCCATTGAAGCTGAGATTCCTATTCTCTTTGGTGAATGGTGGAATGGAGATGTGGAAGAAGTTGAAAACGAGATGTTGAAACATGGAGGTGGGCCTAACGTTTCTGATGCCTACACCATAAATGGCTTACCAGGACCTCTATATCCTTCCTCTACCAAAGACACATTCATTTCAACAGTAGAAAGGGGGAAAACTTACCTGCTGAGAGTCATCAATGCAGCACTCAACAATGAACTTTTCTTCGCCATAGCCAATCACACATTGACAGTGGTGGAAGTTGATGCTGCATACACAAAGCCCTTCAATACCACAGCCATTATGATAGCTCCTGGCCAAACCACCACTCTCCTGCTCAATACAGATCAAGTTCCAGAGCACTCTCAAATGTTCCCAATGGCTATCACACCCTATGTAACTTCAATTTTCCCCTTCAACAATTCCACCTCCATTGGTTTCTTGAGATACAACAGCACAAAAATCAAGAAATTTAGCTCACAAATACCTGAAAACCTCCCAGAAATGAAGGATACTGAGTTTGCTACGGCATTTTTGAACAAACTCCGCAGCCTTGGATCTCCTATGTACCCATGTAATGTTCCTAAGACGGTTCATAAAAGAGTTGTCATAACTATAAGCCTCAACCTTCAAGATTGCCCGTCTGGGAAATCTTGCCAGGGTTTGAACGGGAAGAGCTTCTTTGCTTCTATGAACAATCAATCCTTCGTTCGTCCGGCTTTGTCCATATTGGAATCGCATTACAGAAACACGGCTTCTAAGAGCTACTCTTCCGATTTTCCAGAAAAACCTCCGAAGGTTTATGATTACACGGGTGCGAACCCATTGACGAACAACATGAACGCAAAATTTGGAACTAGGGTTTTGGAAGTTGCATACGGGACAGATTTGGAAATCGTGTTTCAGGGGACAAGTTTTTTGAATGTGGAGAATCATCCAATTCATGTTCATGGGCACAATTTCTTCGTTGTCGGCAGAGGATTTGGGAATTTCAATGTGGCCAGGGATCCGGCGATGTATAATCTCGTCGATCCGCCGGAGAGAAACACGGTAGCGGTATCGATCGGAGGCTGGGCGGCCATCAGAATCAGGGCGAACAATCCAGGAGCTTGGTTTATACATTGTCATCTTGAAGGACATACCTCTTGGGGTCTTGCAATGGGACTCATCGTTCGAAATGGAGTAGGCGAATCAAAATCTCTGCTTCCTCCTCCTAAGGATCTTCCTCTCTGCTAG 2853 43.22 MVLQGEKHSEFFTEYGEGSRYDIQEVIGKGSYGIVGSAIDTQTGERVAIKKIHDVFEHVSDAIRILREIKLLRMLHHPNIVEIKHIMLPPSQREFKDIYLVFELMKTDLHHVIKENNDLSAKQHKFFLYQLLSGLKYIHAANVLHRDLKPKNILANTDCKLKICDFGLARVSFSDAPSTIFWTYTPAIDIWSIGCIFAEMLSGKPLFPGKNVAHQLDLITDLFGTPDAESVAKIRNEKARRYLGNMRKKTPVPFSRKFPNADPLALRLLERLLAFDPKHRLTAAEALTDSYFNDIKKAEIEPSIQPISKLEFDFERKRLTKDDVRELIYAEILEYHPEMCQEGLHDGGQSTFIYPSGVDRFKLQFAHLEENFSKGQRSAPLQRQNVSLPRERVTPPEHKNAEHNNDFGRGEEKSAHLFKSASISASRCVGVIPKEKSEEEETSSEVKSEAVDESTQKIAVLQRHGVKQLRTGWADGPAYITQCPIRAGESYTYKFSVNDQRGTLWWHAHNSWQRASVHGAFIIYPRMPYPFSSTPIEAEIPILFGEWWNGDVEEVENEMLKHGGGPNVSDAYTINGLPGPLYPSSTKDTFISTVERGKTYLLRVINAALNNELFFAIANHTLTVVEVDAAYTKPFNTTAIMIAPGQTTTLLLNTDQVPEHSQMFPMAITPYVTSIFPFNNSTSIGFLRYNSTKIKKFSSQIPENLPEMKDTEFATAFLNKLRSLGSPMYPCNVPKTVHKRVVITISLNLQDCPSGKSCQGLNGKSFFASMNNQSFVRPALSILESHYRNTASKSYSSDFPEKPPKVYDYTGANPLTNNMNAKFGTRVLEVAYGTDLEIVFQGTSFLNVENHPIHVHGHNFFVVGRGFGNFNVARDPAMYNLVDPPERNTVAVSIGGWAAIRIRANNPGAWFIHCHLEGHTSWGLAMGLIVRNGVGESKSLLPPPKDLPLC 950
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 268209 277347 - CmaCh18G000630.1 Cma18g00063 313401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00063 950 Gene3D - 436 528 IPR008972 -
Cma18g00063 950 TIGRFAM laccase: laccase 456 950 IPR017761 GO:0046274|GO:0048046|GO:0052716
Cma18g00063 950 Pfam Multicopper oxidase 460 526 IPR011707 GO:0005507
Cma18g00063 950 Pfam Multicopper oxidase 540 690 IPR001117 -
Cma18g00063 950 CDD CuRO_3_LCC_plant 795 933 IPR034289 GO:0005507
Cma18g00063 950 Gene3D Transferase(Phosphotransferase) domain 1 107 315 - -
Cma18g00063 950 ProSitePatterns MAP kinase signature. 56 159 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cma18g00063 950 MobiDBLite consensus disorder prediction 434 453 - -
Cma18g00063 950 Gene3D Phosphorylase Kinase; domain 1 37 338 - -
Cma18g00063 950 PANTHER LACCASE-1 451 950 - -
Cma18g00063 950 SUPERFAMILY Cupredoxins 727 950 IPR008972 -
Cma18g00063 950 SUPERFAMILY Cupredoxins 537 724 IPR008972 -
Cma18g00063 950 Gene3D - 536 726 IPR008972 -
Cma18g00063 950 ProSitePatterns Protein kinases ATP-binding region signature. 27 51 IPR017441 GO:0005524
Cma18g00063 950 Pfam Multicopper oxidase 799 932 IPR011706 GO:0005507|GO:0016491
Cma18g00063 950 MobiDBLite consensus disorder prediction 375 389 - -
Cma18g00063 950 Pfam Protein kinase domain 21 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00063 950 Gene3D - 755 950 IPR008972 -
Cma18g00063 950 MobiDBLite consensus disorder prediction 392 408 - -
Cma18g00063 950 MobiDBLite consensus disorder prediction 434 452 - -
Cma18g00063 950 PANTHER MULTI-COPPER OXIDASE 451 950 IPR045087 -
Cma18g00063 950 ProSiteProfiles Protein kinase domain profile. 21 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00063 950 SUPERFAMILY Cupredoxins 464 554 IPR008972 -
Cma18g00063 950 ProSitePatterns Multicopper oxidases signature 1. 908 928 IPR033138 -
Cma18g00063 950 SMART serkin_6 21 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00063 950 CDD CuRO_2_LCC_plant 540 689 IPR034285 -
Cma18g00063 950 SUPERFAMILY Protein kinase-like (PK-like) 18 297 IPR011009 -
Cma18g00063 950 MobiDBLite consensus disorder prediction 374 408 - -
Cma18g00063 950 ProSitePatterns Multicopper oxidases signature 2. 913 924 IPR002355 GO:0005507
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00063 Cma-Chr18:268209 Cma17g00278 Cma-Chr17:1464912 0 dispersed
Cma10g00324 Cma-Chr10:1489796 Cma18g00063 Cma-Chr18:268209 0 wgd
Cma11g00304 Cma-Chr11:1510304 Cma18g00063 Cma-Chr18:268209 0 wgd
Cma13g00998 Cma-Chr13:7716467 Cma18g00063 Cma-Chr18:268209 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69261 PF00069 Pkinase 5.50E-56 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00063 K05909 - csv:101208781 799.66