Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00067 ATGAAGAACCTTCTCAAGAAGTTCCATATCATGTCCAGTGGTCAGTCAGATGATGCAGCCGAAGGGTCTACTTCATCAAGGCGCAGTAAATTAATTGAGGTTTCATCGTCTGATAAGCTGCTATCTCGCTCTCGGCCGACCTATTTTAATTCTGAGAATGAACCCTTCTCGGGGATATCCGGCTGGTTGAACTCTGTTACAAATAGGCGTTGCCCCAGCCCGACATCATCTTCGGATCCTACTGCAGGGGAGATAATGGAGCCATCTGTTTCAGTGTCTAGCAGAGAGACTGCAGTGGATACATCAAGGCGTGATTGGAGGTTGAGTAATTCGAGGGATCATGATATAGAGGAAGAGAATCAGATACAGCTTGCTTTGGAAATGAGTGCCAGAGAGGATCCTGAGGCGGCTCAGATTGAGGCTGTGAAGCAGATCAGTTTGGGGTCATGTGATCCTGCTAACACTCCAGCTGAAGTTATTGCCTTTAGATATTGGAATTACAATTCTCTTAGCTATGATGACAAGATCTTGGATGGCTTTTACGACCTATATGGAGTCTTTTCTGAGTCCACCTCAGAAAGAATGCCTTCCCTAGTTGATCTTCAAAGAGAACCAATGTCTGACAGTGTCACTTGGGAAGCAGTTCTGATCAACAAAGCTGCTGACGCAAACTTATTGAAACTAGGGCAGACAGCATTGGAGATGGCCATCAAGACGAGGTCGGAATCTACAATTTCTGTAAATCGTTATTTGGTGCGGAAGCTTGCCGTTTTAGTTTCAGATCATATGGGTGGACCTGTGGGGGATCCTGAAAAGATGTTGAGAAAATGGAGAAATCTTAGTTACAGCTTGAAAGCAACCCTTGGTAGTATGGTTTTTCCCATGGGCTCCCTTACAGTTGGGATGGCTCGTCATCGTGCATTGCTATTCAAGCTTTTGGCAGACGGTGTGGACATCCCTTGTAGGTTGGTGAAAGGACCACAGTACACAGGTTCTGATGATGTAGCAATGAACTTCGTAAAGATTGATGATGGAAGGGAGTACATTGTGGATTTAATGGCAGATCCTGGTACACTTATTCCGGCTGATGTTGCTCGATCGCTTATAGAGTATGATGAATCCGCTTTTTCAGTCGGTCTGCTTTCTAGAGATGTTGGTTCCTCTCAGACAGGCTTTTCAAGCTGTGGGGTTGGCAGTTCATTAGAGGAAAATCTAGATTTTGGTACCACAAAGGAATATGATCCTCCCAATGTTGACAAGGGGCTACCGCACGATTTTGCTAGCAAACCAAATTATCCTGTCATGCACGTAAGATCGCCTTCTTGGACTGAGGGTGTTAGCTCGCCTGCAGTGCGCAGAACGAAAGTAAAGGATGTTTCACAATACATGATTGATGCTGCCAAAGAGAATCCGCGATTGGCTCAGAAGCTTCATGATGTGTTGCTTGAAAGTGGTGTAGTTGCACCCCCAAACTTGTTTACCGGGGTATATCCCGACCAAATAGATGTTATTGTTGGGTCTAAGCCGCCAACTGAAGACAAGGATCAAGGTGGAAAGGTGTCTCGTCTCTGCAACAGTGCAGATAAGAAAGCTTCTCATTCAGCTAATTTTTTGCCTCCCTTGCCTCAGCCCAGACTACATTATAAAGCAAGCCCTACACATGGCCAACAACAGCATCTTAAACCTCTGGAACGCAACCTCTCTCATGATTCAAGAGAAGCACCCGGACAGCCTATAGCCTTACCATTTGAGGTAATTCCAGTGAAGTACGGGAGAAATAGGCCTGTGGCAGCAGCAGCAGCTGCTACTGCAGCTGTTGTTGCATCATCAATGGTCGTAGCTGCAGCCAAGAGTACCGATACAAATCTTGAAATTCCTGTATCTGCTGCTGCCACTGCCACTGCTGCTGCAGTGGTTGCAACAACTGCAGCAGTCAACAAGCAATATGAGCAGGTTGAGGCCGATGCCGCTCTTTATTTGCAGCATGGAAGTGGAGATCGGGAGCAGGACGCTTATGGAGAAAATTCAGAGTGTGAACGAATATCTGATAGATCAGCAGGGAATGAAAGCACAAAATCTGATATTACCATTGACGATGTAGCAGAATGCGAGATCCCATGGGAAGATATCTCCTTGGGAGAGCGTATTGGACTTGGGTCTTATGGGGAGGTCTATCATGGAGATTGGCATGGAACTGAGGTAGCTGTGAAGAGGTTTCTAGACCAGGATATTTCTGGTGAATCTCTTGAAGATCTCAAAAGTGAGGTACGAATTATGAAACGGCTTCGGCATCCAAACGTTGTTCTCTTCATGGGAGCCGTGACACGTGCTCCCAATCTTTCTATCGTTACAGAATTTCTTCCCAGAGGTAGCTTGTACAGGTTAATACACCGTCCCAACAATCAATTAGACGAGCAAAAGCGATTAAGAATGGCCCTTGATGCAGCTCGAGGAATGAACTATTTGCACAATTGCACACCTGTTGTTGTACATCGCGATTTGAAGTCACCAAATCTTCTTGTTGATAGGAATCGGGTTGTGAAGGTATGCGATTTTGGTTTATCAAAAATGAAGCACAGCACGTTTCTTTCTTCAAGGTCAACAGCGGGAACGGCTGAGTGGATGGCTCCAGAAGTGTTGAGAAATGAACCTTCAGATGAAAAGTGTGACGTTTATAGTTACGGAGTCATACTATGGGAACTTTCTACAATGAAACAACCATGGGGAGGAATGAACCCGATGCAAGTTGTTGGCGCCGTTGGCTTTCAGCATCGTCGTCTTGACATCCCAGACAATATAGATCCTGCCATTGCTGACATTATTAGGAAATGCTGGCAAACAGATCCAAGATTAAGACCTTCATTTGCCGAGATCATGGCTGCACTAAAGCCACTGCAGAAGCCAATGTTGAGTTCTCAAGTACCTAGACGGAATGCTTCTGCAGGTAGTGGTCGATCGAAGCCTCGATTATTGCAAGTTGCTGAAGATCCATTAGGATAA 3000 45.57 MKNLLKKFHIMSSGQSDDAAEGSTSSRRSKLIEVSSSDKLLSRSRPTYFNSENEPFSGISGWLNSVTNRRCPSPTSSSDPTAGEIMEPSVSVSSRETAVDTSRRDWRLSNSRDHDIEEENQIQLALEMSAREDPEAAQIEAVKQISLGSCDPANTPAEVIAFRYWNYNSLSYDDKILDGFYDLYGVFSESTSERMPSLVDLQREPMSDSVTWEAVLINKAADANLLKLGQTALEMAIKTRSESTISVNRYLVRKLAVLVSDHMGGPVGDPEKMLRKWRNLSYSLKATLGSMVFPMGSLTVGMARHRALLFKLLADGVDIPCRLVKGPQYTGSDDVAMNFVKIDDGREYIVDLMADPGTLIPADVARSLIEYDESAFSVGLLSRDVGSSQTGFSSCGVGSSLEENLDFGTTKEYDPPNVDKGLPHDFASKPNYPVMHVRSPSWTEGVSSPAVRRTKVKDVSQYMIDAAKENPRLAQKLHDVLLESGVVAPPNLFTGVYPDQIDVIVGSKPPTEDKDQGGKVSRLCNSADKKASHSANFLPPLPQPRLHYKASPTHGQQQHLKPLERNLSHDSREAPGQPIALPFEVIPVKYGRNRPVAAAAAATAAVVASSMVVAAAKSTDTNLEIPVSAAATATAAAVVATTAAVNKQYEQVEADAALYLQHGSGDREQDAYGENSECERISDRSAGNESTKSDITIDDVAECEIPWEDISLGERIGLGSYGEVYHGDWHGTEVAVKRFLDQDISGESLEDLKSEVRIMKRLRHPNVVLFMGAVTRAPNLSIVTEFLPRGSLYRLIHRPNNQLDEQKRLRMALDAARGMNYLHNCTPVVVHRDLKSPNLLVDRNRVVKVCDFGLSKMKHSTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVYSYGVILWELSTMKQPWGGMNPMQVVGAVGFQHRRLDIPDNIDPAIADIIRKCWQTDPRLRPSFAEIMAALKPLQKPMLSSQVPRRNASAGSGRSKPRLLQVAEDPLG 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 280844 289030 + CmaCh18G000670.1 Cma18g00067 313405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00067 999 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 117 136 IPR003903 -
Cma18g00067 999 MobiDBLite consensus disorder prediction 70 97 - -
Cma18g00067 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 829 841 IPR008271 GO:0004672|GO:0006468
Cma18g00067 999 Gene3D Phosphorylase Kinase; domain 1 703 787 - -
Cma18g00067 999 CDD STKc_MAP3K-like 716 962 - -
Cma18g00067 999 ProSitePatterns Protein kinases ATP-binding region signature. 716 737 IPR017441 GO:0005524
Cma18g00067 999 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 997 - -
Cma18g00067 999 MobiDBLite consensus disorder prediction 969 999 - -
Cma18g00067 999 PRINTS Tyrosine kinase catalytic domain signature 784 797 IPR001245 GO:0004672|GO:0006468
Cma18g00067 999 PRINTS Tyrosine kinase catalytic domain signature 823 841 IPR001245 GO:0004672|GO:0006468
Cma18g00067 999 PRINTS Tyrosine kinase catalytic domain signature 870 880 IPR001245 GO:0004672|GO:0006468
Cma18g00067 999 PRINTS Tyrosine kinase catalytic domain signature 889 911 IPR001245 GO:0004672|GO:0006468
Cma18g00067 999 PRINTS Tyrosine kinase catalytic domain signature 933 955 IPR001245 GO:0004672|GO:0006468
Cma18g00067 999 Gene3D Transferase(Phosphotransferase) domain 1 789 973 - -
Cma18g00067 999 ProSiteProfiles Protein kinase domain profile. 710 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00067 999 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 1 997 - -
Cma18g00067 999 MobiDBLite consensus disorder prediction 16 36 - -
Cma18g00067 999 MobiDBLite consensus disorder prediction 667 687 - -
Cma18g00067 999 SUPERFAMILY Protein kinase-like (PK-like) 692 961 IPR011009 -
Cma18g00067 999 SMART serkin_6 710 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00067 999 MobiDBLite consensus disorder prediction 531 559 - -
Cma18g00067 999 MobiDBLite consensus disorder prediction 666 692 - -
Cma18g00067 999 Pfam Ethylene-responsive protein kinase Le-CTR1 157 360 - -
Cma18g00067 999 Pfam Protein tyrosine and serine/threonine kinase 711 962 IPR001245 GO:0004672|GO:0006468
Cma18g00067 999 MobiDBLite consensus disorder prediction 12 36 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00335 Cma-Chr9:1377586 Cma18g00067 Cma-Chr18:280844 1.15E-78 dispersed
Cma17g00369 Cma-Chr17:2061563 Cma18g00067 Cma-Chr18:280844 9.75E-107 dispersed
Cma13g00997 Cma-Chr13:7710320 Cma18g00067 Cma-Chr18:280844 9.80E-88 transposed
Cma13g00996 Cma-Chr13:7694080 Cma18g00067 Cma-Chr18:280844 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69262 PF07714 PK_Tyr_Ser-Thr 2.80E-67 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00067 - - csv:101209024 1654.42