Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00068 ATGGCTTCTCTATTCGGATCAACTGCACTTCTCTCCCACCCACTTACCGGAACTTATCACTTAGCTGCCTCACAGACGCCTCCACCTTCTCAACCACAGCAAACTCCGCCGCCATCTCCATCTCTGAGCACTTCTTCATTGGAGCAACTAAAGCCAGCCCCATCAAAGGTGGAGCAGCAGAGGCCTGCCACTCATGTAGAAACTACAGAATGGGGTGCTTCAACCTTGACAAGGCGATATGGACTCAGCGCTGGCCTTGCCTGTGCTGCTTTTCTCGCCGTTGGTATAGTTTCCCAAGAAGAAGCAAATAAAAGAAACGTTGAAAAGGAAGAGGAAGTAGTCCTACAAAATGGCATAAGGTACTACGAGACGAGGGTCGGTCATGGCACCGTACCGAGGTCCGGGGACCTCGTTGTGATTGATCTCAAAGGGAAAATACAAGGCAGTAATGACATATTTATAGATACATTTGTGAATGAGACAAAGCCATTGGCTATGATGATGGGCTCAAGACCTTACTGCAAAGGAATGTGTGAAGGTTTGGAATATGTGGTGAGATCCATGAAACCAGGCGGTAGGAGGAGAGTTATAATTCCTTATGATTTGGGGTTTGGAGAAAAAGGTGCTGATTTAGGCACTGGCTTTCCAATTCCTCCATTTGCAACATTAGAGTATGCAGTTGAGATTGATGAGGCTTCCATTGCAGCTGCTTGA 714 47.06 MASLFGSTALLSHPLTGTYHLAASQTPPPSQPQQTPPPSPSLSTSSLEQLKPAPSKVEQQRPATHVETTEWGASTLTRRYGLSAGLACAAFLAVGIVSQEEANKRNVEKEEEVVLQNGIRYYETRVGHGTVPRSGDLVVIDLKGKIQGSNDIFIDTFVNETKPLAMMMGSRPYCKGMCEGLEYVVRSMKPGGRRRVIIPYDLGFGEKGADLGTGFPIPPFATLEYAVEIDEASIAAA 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 290057 291891 + CmaCh18G000680.1 Cma18g00068 313406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00068 237 MobiDBLite consensus disorder prediction 20 70 - -
Cma18g00068 237 SUPERFAMILY FKBP-like 95 229 - -
Cma18g00068 237 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 135 233 IPR001179 GO:0003755
Cma18g00068 237 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 130 229 IPR001179 GO:0003755
Cma18g00068 237 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP17-2, CHLOROPLASTIC 1 236 - -
Cma18g00068 237 Gene3D - 96 232 IPR046357 GO:0003755
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00068 - - - csv:101218914 319.316
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00068 Cma-Chr18:290057 Cma13g00433 Cma-Chr13:4880711 1.87E-07 dispersed
Cma18g00068 Cma-Chr18:290057 Cma13g00996 Cma-Chr13:7694080 1.21E-72 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g220 . . . . . . . . . Cmo18g00051 . . . . . Cpe20g00146 . . . . . . . . . . . . . . . . . . . . Csa01g00708 Chy12g01403 Cme12g01836 . . . . . . . . Sed01g1762 . . . Cma18g00068 Car13g00830 Car18g00059 Cpe09g01118 . Bhi08g01285 Tan05g2199 Cmetu12g1628 Lac10g0284 Hepe07g2359 . . Cla04g01053 Cam04g1096 Cec01g1611 Cco01g1657 Clacu04g1122 Cmu04g1106 Cre01g1405 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013704 1 1 0 0 1 1 2 0 1 1 1 0 1 1 1 1 0 1 2 1 1 1 1 1 0 0 1 1 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00068 Cma_Chr18 FPKM 0.89644 1.118167 9.813926 9.981162 80.872223 86.513901 78.723785 4.215236 3.89491 4.41071