Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00071 ATGTGGATGATGGGTTACAATGACGGCGGAGATTTGAACTTTTCTTCCGATTCATTCAATGCCCGGAAGCTTCGACCTCTCATTCCTCGCCCTCTCTCTTCTCCCTCCACCAACGATTTCTTCTCTCAATTTTATCAAATGGGGACTGATCAGAGCAAGAGAGAGTTGAATAATGCACCACCGCCGCCGGTCGTCGTAAGCTCGCGGTGGAATCCGACGCCGGAGCAGTTGAGATTGCTGGAGGAATTGTACCGCCGGGGGACTCGAACACCGTCCGCCGACCAGATTCAACATATCACCGCTCAGCTCCGCCGTTTTGGGAAGATCGAAGGGAAGAACGTGTTCTATTGGTTTCAGAATCACAAAGCTAGAGAGCGGCAGAAACGCCGCCGTCAGATGGAATCTTCCGACCAGTCGATTTGCGACATTGAAATCCTCGAACGGAAAGATTCAGGGTCGGGTAGGACAGTCTATGAAGTTGAACACACCAAGAACTGGCCTACCTCTACAAACTGCCCCACTCCCGGCGGTGTCGGTGGCGTTGGCATTGGCATTGGAGGCTGCAGGCAACTGATGATGAACACCGCCCCCATCGCCGCCACCACCACGACCGCCACAGTTACAACAATAATGCACCAAAATGATGGGGTTGAAGGATTAGAAGAATCAGAAACCCTACAACTTTTTCCATTGTGCAGTGAGACAAGAAATGGTGGGTGTGAAACAGTGGAAAGCTCAGGGATGAACAGTGCTAATGTGATGACTCCACTTCAGTTCTTTGAATTCCTTCCATTGAAGAATTGA 804 50.62 MWMMGYNDGGDLNFSSDSFNARKLRPLIPRPLSSPSTNDFFSQFYQMGTDQSKRELNNAPPPPVVVSSRWNPTPEQLRLLEELYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESSDQSICDIEILERKDSGSGRTVYEVEHTKNWPTSTNCPTPGGVGGVGIGIGGCRQLMMNTAPIAATTTTATVTTIMHQNDGVEGLEESETLQLFPLCSETRNGGCETVESSGMNSANVMTPLQFFEFLPLKN 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 303833 306669 - CmaCh18G000710.1 Cma18g00071 313409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00071 267 Gene3D - 52 143 - -
Cma18g00071 267 SUPERFAMILY Homeodomain-like 67 133 IPR009057 -
Cma18g00071 267 Pfam Homeodomain 68 127 IPR001356 GO:0003677
Cma18g00071 267 MobiDBLite consensus disorder prediction 51 70 - -
Cma18g00071 267 CDD homeodomain 69 129 IPR001356 GO:0003677
Cma18g00071 267 ProSiteProfiles 'Homeobox' domain profile. 73 128 IPR001356 GO:0003677
Cma18g00071 267 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 31 267 IPR044555 GO:0003700|GO:0099402
Cma18g00071 267 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 31 267 - -
Cma18g00071 267 SMART HOX_1 65 132 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00311 Cma18g00071 CCT
Cma11g00311 Cma18g00071 ECH
Cma13g00993 Cma18g00071 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00124 Cma-Chr15:578806 Cma18g00071 Cma-Chr18:303833 6.67E-28 dispersed
Cma18g00071 Cma-Chr18:303833 Cma20g00448 Cma-Chr20:2126538 9.63E-29 dispersed
Cma13g00994 Cma-Chr13:7687633 Cma18g00071 Cma-Chr18:303833 5.52E-14 transposed
Cma11g00311 Cma-Chr11:1543460 Cma18g00071 Cma-Chr18:303833 2.08E-58 wgd
Cma13g00993 Cma-Chr13:7684742 Cma18g00071 Cma-Chr18:303833 1.59E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36732 PF00046 Homeodomain 3.00E-19 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00071 - - cmax:111490342 477.248