Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma18g00074 | ATGGAGAGCTTATTAGGTCTTCTTCGTATTCGGATCATTCGCGGCGTCAACCTCGCCGTTCGCGATGTTCGCAGCAGCGATCCTTACATCGTCGTTAAATTGAATAAACAGAAATTGAAGACCCGTGTGATCAAGAAGGATGTCAATCCTGAATGGAACGAGGACCTCACTCTTTCTGTTACCGACCCTGATGTTTCAGTCAAGCTCACGGTGTACGACCACGACACGTTTACGATGGACGACAAGATGGGAGATGCGGAGTTCGAGATAGGGCCATACATCGAAGCACTGAAGATGGATTTGGCAGAGCTACCTAGTGGAACCGTGCTGTCAAGAGTGCAGCCATGCAGGCAAAATTGCTTAGCCGAGGAGAGCGCCATAGTGTGGGAGGAAGGCAAGGTTATTCAAAACATTTGCCTGCGCTTGCGCAATGTTGAATGTGGCGAAGTTGAAATCCAGTTGCAGTGGATTGAGCTTCCTGGTGCCAAAGGTTTGTAA | 498 | 49.0 | MESLLGLLRIRIIRGVNLAVRDVRSSDPYIVVKLNKQKLKTRVIKKDVNPEWNEDLTLSVTDPDVSVKLTVYDHDTFTMDDKMGDAEFEIGPYIEALKMDLAELPSGTVLSRVQPCRQNCLAEESAIVWEEGKVIQNICLRLRNVECGEVEIQLQWIELPGAKGL | 165 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 329922 | 331187 | + | CmaCh18G000740.1 | Cma18g00074 | 313412 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma18g00074 | 165 | CDD | C2_ArfGAP | 5 | 148 | - | - | |
| Cma18g00074 | 165 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4-LIKE | 1 | 164 | - | - | |
| Cma18g00074 | 165 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 6 | 143 | IPR035892 | - | |
| Cma18g00074 | 165 | Pfam | C2 domain | 6 | 92 | IPR000008 | - | |
| Cma18g00074 | 165 | Gene3D | C2 domain | 4 | 163 | IPR035892 | - | |
| Cma18g00074 | 165 | ProSiteProfiles | C2 domain profile. | 1 | 106 | IPR000008 | - | |
| Cma18g00074 | 165 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 164 | IPR044562 | - | |
| Cma18g00074 | 165 | SMART | C2_3c | 7 | 102 | IPR000008 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma13g00989 | Cma18g00074 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g00062 | Cma-Chr4:293140 | Cma18g00074 | Cma-Chr18:329922 | 3.44E-67 | dispersed | |
| Cma04g02122 | Cma-Chr4:14870828 | Cma18g00074 | Cma-Chr18:329922 | 1.81E-72 | dispersed | |
| Cma14g00837 | Cma-Chr14:4298388 | Cma18g00074 | Cma-Chr18:329922 | 1.78E-82 | dispersed | |
| Cma18g00074 | Cma-Chr18:329922 | Cma07g00060 | Cma-Chr7:331093 | 2.92E-40 | dispersed | |
| Cma10g00328 | Cma-Chr10:1510138 | Cma18g00074 | Cma-Chr18:329922 | 8.09E-93 | wgd | |
| Cma11g00314 | Cma-Chr11:1562997 | Cma18g00074 | Cma-Chr18:329922 | 1.53E-88 | wgd | |
| Cma13g00989 | Cma-Chr13:7660727 | Cma18g00074 | Cma-Chr18:329922 | 4.16E-100 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma18g00074 | - | - | cmo:103502345 | 295.049 |