Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00076 ATGCAACTGAAAGCTCGTAGACTTCAGGTCATTTTTCTAATTCTATGTCTATGCTCTCTTTTCATCAATGCTCGTCCATATCTCATCGTCATCTCTCAAGATGACCTCAAGGATGGTGCACTCGCCGACGACTTCCTCGATTCCGCCAACTCCGATTCCGCCGAGTGGGATGAATTTGGGGAGCCTGAATCTCAAAACTCCAGCGAGGAGCTCGACCCGGGCTCTTGGCGCCCTATATTCGAACCGGATTCCCCTTCCTCCGCCTCCGACGCGCCGGAGGATCTGTACTACACTGCTTTAGGGAAATTTATGTCGTCGGTGAGTTCCGGTGACTTAAGGTTGATGGAGGATGCGGTTGCGGACATTGATCAAGTTGCTGCGGGGAGTGGGGATCCGCACGCGCAATCGGTACTAGGGTTACTACATGGAATGGGGATAATGAAGGAGACGAACAAGGCTAAAGCGTTTATGTATCATTACTTTGCCGCTGAAGGGAATAAGCAATCTAAGATGGCTCTTGCGTATATTTACTTCAGGCAAGAAATGTATGAGAAAGCAGTCAAGCTTTATGCTGAATTAGCAGAGGTAGCTATTAACAGTTTATTAGTTTCTAAGGACTCTCCAGTGATTGAACCTGTGAGGATCCATAATGGGGCTGAGGAGAACAAGCAAGCTTTAAGAAAGTCTAGAGGAGAGGAGGACGAAGACTTCCAAATTTTGGAGTATCAGGCGCAGAAGGGTAATGCTGGAGCTATGTATAGAATTGGACTATTTTACTATTTTGGACTGAGAGGGTTGAGGCGTGATCATGCCAAGGCACTGTCCTGGTTTTCCAAGGCTGTGGAGAAAGGTGAACCAAGGTCTATGGAACTAGTTGGAGAGATATATGCAAGGGGTGCCGGAGTTGAGAGGGATTACACTAAGGCACTTCAATGGCTAACTCGTGCGTCCAAGCAGCCATCATTTTCTGCTTATAATGGCATGGGGTATTTGTACGTCAAGGGCTATGGGGTAGAGAAAAACTTTACCAAGGCCAAGGAGTACTTTGAGAAAGCTGCCAATAACGACGAGTCTGGTGGTCATTATAATCTAGGAGTTATGTATCTTAAAGGAATTGGAGTAAAGAGAGATGTGAAGAAGGCATGTACTCATTTTATAGTGGCTGCTAATGCTGGACAACCAAAAGCATTCTATCAGCTGGCAAAGATGTTTCATACTGGTGTTGGGCTCAAGAGGAATATTCCTATGGCAAGTGCACTGTACAAATTAGTTGCCGAACGAGGACCTTGGAGTTCATTGTCTAGATGGGCATTGGAATCATATCTGAAAGCTGACATTCGCAAGGCATTCTTCTTGTATACAAGAATGGCAGAGCTAGGATACGAGGTGGCACAAAGCAATGCAGCATGGATACTTGACAAATATGGAGAACAAAGCATGTGTCTGGGGGAATATGGCTTTTGCGCCAAGGCAGAAAGACATCAAAGAGCTCATTCTCTTTGGTGGCAAGCATCCGAGCAGGGCAATGAACATGCCGCTTTACTGATTGGGGATGCATATTACTACGGTCGGGGCACTGACGTAGATTATGATCGTGCTGCGGAAGCATACATGCATGCCAAATCCCAGCTAAATGCACAAGCCATGTTCAACCTTGGTTACATGCATGAACACGGTCTAGGCCTTCCGTTTGACCTTCACCTAGCCAAGCGTTACTATGATCAAGCTCTGGAACTTGATCCAGCTGCTAGGTTGCCAGTCAAGCTGGCTCTAGGAAGCCTGTGGTTACGAAAGAATCATGCGGACTGTTTTCTGGTCCATGTGATTGATTCGTTGCCAGAAGTTTATCCAAAAATTGATGCATGGGTGGAGGATGTACTGTTGGAGGAAGGAAATGCAACAATTCTAACTCTATTTGCCTGCCTCCTCACTGTCCTATATCTTAGAGAGCGACAAAGGAGGCACGCAGCTGTTCGTGCTGCTGCGGTGGCTGTGCCACTCCACCCCAATGACCACGCAGTGGCTGCACAAAATTAA 2037 46.78 MQLKARRLQVIFLILCLCSLFINARPYLIVISQDDLKDGALADDFLDSANSDSAEWDEFGEPESQNSSEELDPGSWRPIFEPDSPSSASDAPEDLYYTALGKFMSSVSSGDLRLMEDAVADIDQVAAGSGDPHAQSVLGLLHGMGIMKETNKAKAFMYHYFAAEGNKQSKMALAYIYFRQEMYEKAVKLYAELAEVAINSLLVSKDSPVIEPVRIHNGAEENKQALRKSRGEEDEDFQILEYQAQKGNAGAMYRIGLFYYFGLRGLRRDHAKALSWFSKAVEKGEPRSMELVGEIYARGAGVERDYTKALQWLTRASKQPSFSAYNGMGYLYVKGYGVEKNFTKAKEYFEKAANNDESGGHYNLGVMYLKGIGVKRDVKKACTHFIVAANAGQPKAFYQLAKMFHTGVGLKRNIPMASALYKLVAERGPWSSLSRWALESYLKADIRKAFFLYTRMAELGYEVAQSNAAWILDKYGEQSMCLGEYGFCAKAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTDVDYDRAAEAYMHAKSQLNAQAMFNLGYMHEHGLGLPFDLHLAKRYYDQALELDPAARLPVKLALGSLWLRKNHADCFLVHVIDSLPEVYPKIDAWVEDVLLEEGNATILTLFACLLTVLYLRERQRRHAAVRAAAVAVPLHPNDHAVAAQN 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 332594 336106 - CmaCh18G000760.1 Cma18g00076 313414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00076 678 SUPERFAMILY HCP-like 335 582 - -
Cma18g00076 678 Pfam Sel1 repeat 361 392 IPR006597 -
Cma18g00076 678 Pfam Sel1 repeat 512 534 IPR006597 -
Cma18g00076 678 Pfam Sel1 repeat 398 428 IPR006597 -
Cma18g00076 678 Pfam Sel1 repeat 442 461 IPR006597 -
Cma18g00076 678 Pfam Sel1 repeat 250 284 IPR006597 -
Cma18g00076 678 Pfam Sel1 repeat 287 320 IPR006597 -
Cma18g00076 678 Pfam Sel1 repeat 546 580 IPR006597 -
Cma18g00076 678 Pfam Sel1 repeat 132 165 IPR006597 -
Cma18g00076 678 Pfam Sel1 repeat 323 356 IPR006597 -
Cma18g00076 678 Gene3D Tetratricopeptide repeat domain 53 197 IPR011990 GO:0005515
Cma18g00076 678 SUPERFAMILY HCP-like 230 356 - -
Cma18g00076 678 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 4 661 IPR044623 GO:0030433
Cma18g00076 678 SUPERFAMILY HCP-like 123 195 - -
Cma18g00076 678 Gene3D Tetratricopeptide repeat domain 216 591 IPR011990 GO:0005515
Cma18g00076 678 MobiDBLite consensus disorder prediction 52 90 - -
Cma18g00076 678 SMART sel1 132 167 IPR006597 -
Cma18g00076 678 SMART sel1 286 321 IPR006597 -
Cma18g00076 678 SMART sel1 358 393 IPR006597 -
Cma18g00076 678 SMART sel1 546 581 IPR006597 -
Cma18g00076 678 SMART sel1 394 429 IPR006597 -
Cma18g00076 678 SMART sel1 510 545 IPR006597 -
Cma18g00076 678 SMART sel1 322 357 IPR006597 -
Cma18g00076 678 SMART sel1 249 285 IPR006597 -
Cma18g00076 678 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 4 661 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00076 K14026 SEL1, SEL1L; SEL1 protein - csv:101221047 1234.94
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00986 Cma18g00076 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00040 Cma-Chr5:169808 Cma18g00076 Cma-Chr18:332594 5.72E-08 transposed
Cma13g00986 Cma-Chr13:7648366 Cma18g00076 Cma-Chr18:332594 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g193 . . Bda06g00823 . . . . Bma12g01247 Cmo13g01021 Cmo18g00058 . . . . . Cpe20g00156 . . . . . . . . . . . . . . . . . . Cone19ag0338 Lsi02g00238 Csa01g00719 Chy12g01393 Cme12g01827 . Blo15g00056 . . Bpe07g01051 . . . Sed08g2761 . . Cma13g00986 Cma18g00076 Car13g00822 Car18g00067 Cpe09g01111 . Bhi08g01299 Tan05g2186 Cmetu12g0492 . Hepe07g2351 . . Cla04g01042 Cam04g1087 Cec01g1600 Cco01g1648 Clacu04g1113 Cmu04g1096 Cre01g1395 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006564 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00076 Cma_Chr18 FPKM 4.822857 5.226507 2.908567 2.944513 3.806138 3.822796 3.920597 3.086448 3.209068 3.055406