Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00081 ATGCGAACCCAGATGGAAAATCGTTTGATTTCTCTGTTGCTCTTCAGTTTCCTTCTTCTACTCCCCACTGCGAAGCCAGATCTTGCTTCTGATAGAACAGCTCTGTTAGCTCTCCGTTCCGCTGTCGGCGGCCGGACTCTTCTGCTCTGGAATGTGACCGATCAGAACACCTGTTCTTGGCCCGGGATTCATTGCGAGGAGAATCGTGTTACTGTTCTTCGTCTTCCCGGCGCGGCGCTTTCTGGTCGGTTACCGGACGGAGTTTTTGGAAACTTGACTCACCTTCGCACTCTCAGTCTTCGGCTCAACGCCCTGTCCGGTCAGCTCCCATCAGATCTCTCTGCTTGCACTAATCTTCGCAACCTCTATCTACAAGGTAATGAGTTTTCGGGCCTTGTCCCTGATTTCTTGTTCCAGCTTCCTGATCTTGTTCGCCTTAATTTAGCCTCCAATAACTTTTCCGGCGAGATCTCATTGAGCTTCAACAATTTGACTCGTCTTAAGACATTGTTCCTTGAAAACAATCGCTTATCTGGGTCTATCCCGGACTTGAAGATCCCACTGGATCAGTTCAATGTTTCTAACAATCAATTAAATGGGTCGGTTCCAAAGGGTTTGCAATCGTTTTCTTCAAATTCCTTCTTGGGTAATTCTCTCTGCGGGCATCCTCTTGCGGCTTGCCCTGGGGAGAATGGGGATAATATCGATTCTAAACACAAGAAAAAGCTCTCAGGAGGAGCCATTGCTGGGATTATCATTGGATCTGTTTTGGGTTTTGTATTGATACTTGTAATCTTAATGCTTTTGTGTCGAAAGAAGAGTGCTAAGGAAACAAGTGCAGTGGATGTTGCCACGGTGAAGCATCCTGAAGTGGAAATTCAGGGCGGTAAGCCACCAGGGGAGGTTGAAAATGGTGGCTACAGTAATGGTTATACTGTGCAAGCCGCCGCTGCTGTTGGTGGTGGTGCTGCTGCAACAGTGGCGGCGGGGACTGCAAAGAGGGAAGTGAATGGTAATGGAATTGGGTCCAAAAAATTGGTGTTTTTTGGTAATGCTGCAAGGGTGTTTGATTTGGAGGATCTTTTGAGAGCTTCAGCGGAAGTGTTGGGAAAAGGAAGCTTTGGGACTGCTTACAAAGCTGTTCTTGAAGTGGGTTCTGTGGTGGCTGTGAAGAGATTGAAGGATGTTACCGTAACAGAGAGGGAATTCAGGGAGAAGATTGAAGCTGTTGGATCAATGGATCATGAATGTTTGGTCCCTCTCAGGGCTTACTATTTCAGTATGGATGAGAAGCTTCTTGTCTATGATTACATGGCCATGGGAAGCTTGTCTGCTCTTCTACACGGGAACAAAGGAGCTGGTAGGACTCCGTTGAACTGGGAAATCAGGTCTGGAATCGCTCTTGGCGCTGCTCGTGGCATCGAATATCTTCATTCTCAAGGTCCTAATGTTTCCCATGGAAACATAAAGTCATCGAATATTCTTCTAACGAAATCGTACGATGCTCGAGTCTCTGATTTTGGATTGGCCCATCTTGTTGGACAACCTTCCACCCCCAACCGAGTTGCTGGATATCGCGCACCGGAGGTCACTGATCCTCGTAAAGTTTCGCAGAAGGCTGATGTCTATAGCTTTGGTGTATTGCTATTGGAGCTTTTGACAGGGAAGGCTCCTACCTACTCCGTTTTAAATGAGGAAGGAGTCGATTTACCAAGATGGGTGCAGTCAGTTGTTAGGGAGGAGTGGACATCCGAAGTTTTCGACCTCGAGCTTCTTAGGTACCAAAACGTCGAGGAGGAGATGGTTCAACTCTTGCAACTTGCAGTCGATTGCGCAGCTCAATATCCTGATAAGCGTCCTGCAATGTCGGAAGTCACAAAGCGTATACAAGAGCTTCGTCAATCCAGCATTCACGACGTTGCGAATGTACAACCCGACGCTGGTCATGATTCAGACGACATGGGTTCTAGGTGA 1974 47.47 MRTQMENRLISLLLFSFLLLLPTAKPDLASDRTALLALRSAVGGRTLLLWNVTDQNTCSWPGIHCEENRVTVLRLPGAALSGRLPDGVFGNLTHLRTLSLRLNALSGQLPSDLSACTNLRNLYLQGNEFSGLVPDFLFQLPDLVRLNLASNNFSGEISLSFNNLTRLKTLFLENNRLSGSIPDLKIPLDQFNVSNNQLNGSVPKGLQSFSSNSFLGNSLCGHPLAACPGENGDNIDSKHKKKLSGGAIAGIIIGSVLGFVLILVILMLLCRKKSAKETSAVDVATVKHPEVEIQGGKPPGEVENGGYSNGYTVQAAAAVGGGAAATVAAGTAKREVNGNGIGSKKLVFFGNAARVFDLEDLLRASAEVLGKGSFGTAYKAVLEVGSVVAVKRLKDVTVTEREFREKIEAVGSMDHECLVPLRAYYFSMDEKLLVYDYMAMGSLSALLHGNKGAGRTPLNWEIRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGQPSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTYSVLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPAMSEVTKRIQELRQSSIHDVANVQPDAGHDSDDMGSR 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 358045 360757 - CmaCh18G000810.1 Cma18g00081 313419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00081 657 Gene3D Ribonuclease Inhibitor 142 227 IPR032675 -
Cma18g00081 657 Pfam Leucine rich repeat 83 128 IPR001611 GO:0005515
Cma18g00081 657 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Cma18g00081 657 SUPERFAMILY L domain-like 30 211 - -
Cma18g00081 657 PANTHER INACTIVE RECEPTOR KINASE-RELATED 8 652 - -
Cma18g00081 657 ProSiteProfiles Protein kinase domain profile. 363 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00081 657 ProSitePatterns Protein kinases ATP-binding region signature. 369 391 IPR017441 GO:0005524
Cma18g00081 657 SUPERFAMILY Protein kinase-like (PK-like) 367 628 IPR011009 -
Cma18g00081 657 Gene3D Transferase(Phosphotransferase) domain 1 438 651 - -
Cma18g00081 657 PANTHER OS05G0588300 PROTEIN 8 652 - -
Cma18g00081 657 Pfam Protein kinase domain 366 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00081 657 Gene3D Ribonuclease Inhibitor 30 139 IPR032675 -
Cma18g00081 657 Gene3D Phosphorylase Kinase; domain 1 331 437 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00744 Cma-Chr1:3967055 Cma18g00081 Cma-Chr18:358045 0 dispersed
Cma15g00759 Cma-Chr15:3708343 Cma18g00081 Cma-Chr18:358045 0 dispersed
Cma18g00081 Cma-Chr18:358045 Cma11g00586 Cma-Chr11:2810031 0 dispersed
Cma14g00829 Cma-Chr14:4231658 Cma18g00081 Cma-Chr18:358045 0 transposed
Cma13g00981 Cma-Chr13:7624942 Cma18g00081 Cma-Chr18:358045 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69263 PF00069 Pkinase 2.30E-37 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00081 - - csv:101222458 1107.43