Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00085 ATGGCGTCGTTGAATTTCACCCAGATCAGAAACAAAAACCCAATTTCCGAGCTCACTCTGACTCGGTCTCAGACGACGGGTTTGGCTCGTCGGACTCGAGTTGGGTTCAAAGTGGTTGCCGCCGGTGAGTCTCCGGTGGAGCCCGATCTCAGTGTGACGGTCAATGGGTTGCACATGCCCAACCCGTTCGTAATCGGTTCCGGTCCTCCCGGAACGAACTATACGGTTATGAAGAGGGCATTCGATGAAGGGTGGGGGGCTGTGATCGCCAAAACTGTATCATTAGATGCAGCTAAAGTTATAAATGTTACTCCACGATATGCTCGGCTTCGAGCAGATTCGAATGGTTCGGCAAAAGGGCAGATTATAGGGTGGGAGAACATTGAATTGATAAGTGATAGACCTCTTGAAACTATGTTGAAAGAGTTTAAGCAGTTGAAGGAGGAGTATCCTGATAGGATTCTTATTGCTTCGATCATGGAGGAGTATAATAAAGATGCTTGGGAAGAACTTATCGATCGAGTCGAACAAACCGGAGTTGATGCATTTGAAATCAATTTCTCGTGTCCTCATGGCATGCCCGAACGGAGAATGGGCGCTGCGGTCGGGCAGGATTGCGCGCTTTTGGAAGAGGTTTGTGGATGGATAAATGCTAAAGCTACAATCCCTGTGTGGGCTAAAATGACTCCCAATATCACTGACATTGCACAGCCTGCAAGGGTGGCTCTGAAATCAGGATGCGAGGGAATAGCAGCCATCAACACGATCATGAGTGTAATGGGAATCGACCTCAAGACCTTACGTCCCGAGCCTTGTGTCGAGGGGTACTCAACTCCTGGAGGCTACTCTTCCAAGGCAGTTCATCCTATTGCTCTTGGTAAAGTGTTGAGCATTGCAAAAATGATGAAGGCAGAGTTTAATGATGCAGGCTACTCTCTTTCTGGCATTGGGGGTGTTGAAACCGGTGGAGACGCTGCCGAGTTTATTCTACTCGGAGCTAACTCTGTTCAGAAGCTTTGTGCGGAGCTGAAGGACTTCATGAAACTTCACAACTTCTCATCCATAGAAGATTTCAGAGGGGCTTCTCTTCCGTATTTCACGACCCACACGGATTTGGTTCGGAGGCAGCGGGAAGCAATCGAGCAGAGAAAAGCTGTGAAGAAAGGGCTGCAATCTGATAAAGATTGGACTGGCGATGGCTTTGTTAAAGAGACAGAGAGTATGGTTTCCAACTAA 1236 48.14 MASLNFTQIRNKNPISELTLTRSQTTGLARRTRVGFKVVAAGESPVEPDLSVTVNGLHMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDAAKVINVTPRYARLRADSNGSAKGQIIGWENIELISDRPLETMLKEFKQLKEEYPDRILIASIMEEYNKDAWEELIDRVEQTGVDAFEINFSCPHGMPERRMGAAVGQDCALLEEVCGWINAKATIPVWAKMTPNITDIAQPARVALKSGCEGIAAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSSKAVHPIALGKVLSIAKMMKAEFNDAGYSLSGIGGVETGGDAAEFILLGANSVQKLCAELKDFMKLHNFSSIEDFRGASLPYFTTHTDLVRRQREAIEQRKAVKKGLQSDKDWTGDGFVKETESMVSN 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 374761 379228 - CmaCh18G000850.1 Cma18g00085 313423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00085 411 Gene3D Aldolase class I 50 352 IPR013785 -
Cma18g00085 411 Pfam Dihydroorotate dehydrogenase 50 340 IPR005720 GO:0005737|GO:0016627
Cma18g00085 411 PANTHER DIHYDROPYRIMIDINE DEHYDROGENASE [NADP(+)] 2 411 IPR044512 GO:0006210|GO:0006212
Cma18g00085 411 CDD DHPD_FMN 49 357 - -
Cma18g00085 411 MobiDBLite consensus disorder prediction 391 411 - -
Cma18g00085 411 PANTHER BNAA01G27800D PROTEIN 2 411 - -
Cma18g00085 411 SUPERFAMILY FMN-linked oxidoreductases 47 363 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00085 K00207 DPYD; dihydropyrimidine dehydrogenase (NADP+) [EC:1.3.1.2] - csv:101202899 752.666
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00977 Cma-Chr13:7608693 Cma18g00085 Cma-Chr18:374761 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g166 . . Bda06g00868 . . . . Bma12g01285 . Cmo18g00064 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00733 Chy12g01380 Cme12g01813 . Blo15g00017 . . Bpe07g01089 . . . . . . . Cma18g00085 Car13g00813 Car18g00074 Cpe09g01105 . Bhi08g01329 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008474 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00085 Cma_Chr18 FPKM 29.152029 26.464346 20.019165 21.394398 21.077225 22.106529 21.241997 17.936796 19.190044 17.255234