Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma18g00086 | ATGGCTCAGGTTCGTGATCGCCGCCAGTTGATACTCCGCCTCCCGGACCTCTCCGACTGCGGTCCCCACTTCCCCCTCCCCCTCCCTCCCTCCTCTGCCCCTGCCATCTCCTCCTCCGACCTCGAAAAGCTCCAAGTCCTCGGGCATGGCAACGGCGGCACAGTCTACAAAGTCCGCCACAAGCGCACCTCCAACATCTACGCTCTCAAGGTCGTCCACGGCGATGGCGATCCCACCGTTCGCCGCCAGGTTTTCAGAGAGATGGAGATTCTCCGCCGTACGGACTCTCCTTACGTCGTGAAATGCCATGGAATCTTCGAGAAGCCGTCTGGAGATGTCACGATTTTGATGGAGTATATGGATCTAGGATCGCTTGATACGCTCTTGAAGAAGAATACCACGCTGTCAGAGGCCACCCTCGCTCACGTATCGCGTCAGGTTCTTAATGGCCTTCACTACCTTCACTCTCATAAAATCATTCATCGCGATATTAAACCGTCGAATCTCTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTTAGTAAAATCATGTGCAGGACATTGGATGCTTGCAATTCCTACGTCGGAACCTGCGCTTATATGAGTCCGGAGCGGTTCGATCCAGAGACTTACGGCGGAAATTACAACGGTTACGCCGGAGACATATGGAGTTTAGGCCTTACTCTTCTGGAACTCTATTTAGGCCATTTTCCTTTTCTTCCGCGTGGTCAGAGACCGGATTGGGCGACTCTGATGTTTGCGATTTGCTTTGGTGAGCCGCCGACGCTGCCGGAGGATGCGTCAGAGGAGTTTCGAAGCTTCGTCCAGAGTTGTTTGCAGAAGGAATCGAGCAAGAGATGGACGGCGGCGCAATTATTGACGCATCCGTTTGTGTGTAAGGAATCGTGA | 921 | 52.77 | MAQVRDRRQLILRLPDLSDCGPHFPLPLPPSSAPAISSSDLEKLQVLGHGNGGTVYKVRHKRTSNIYALKVVHGDGDPTVRRQVFREMEILRRTDSPYVVKCHGIFEKPSGDVTILMEYMDLGSLDTLLKKNTTLSEATLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPRGQRPDWATLMFAICFGEPPTLPEDASEEFRSFVQSCLQKESSKRWTAAQLLTHPFVCKES | 306 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 383549 | 384469 | - | CmaCh18G000860.1 | Cma18g00086 | 313424 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma18g00086 | 306 | PANTHER | SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED | 5 | 305 | - | - | |
Cma18g00086 | 306 | SMART | serkin_6 | 41 | 302 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma18g00086 | 306 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 159 | 171 | IPR008271 | GO:0004672|GO:0006468 | |
Cma18g00086 | 306 | Gene3D | Transferase(Phosphotransferase) domain 1 | 123 | 306 | - | - | |
Cma18g00086 | 306 | ProSiteProfiles | Protein kinase domain profile. | 41 | 302 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma18g00086 | 306 | Gene3D | Phosphorylase Kinase; domain 1 | 30 | 121 | - | - | |
Cma18g00086 | 306 | Pfam | Protein kinase domain | 42 | 302 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma18g00086 | 306 | ProSitePatterns | Protein kinases ATP-binding region signature. | 47 | 70 | IPR017441 | GO:0005524 | |
Cma18g00086 | 306 | SUPERFAMILY | Protein kinase-like (PK-like) | 39 | 303 | IPR011009 | - | |
Cma18g00086 | 306 | PANTHER | MITOGEN-ACTIVATED KINASE KINASE KINASE | 5 | 305 | - | - | |
Cma18g00086 | 306 | CDD | PKc_MAPKK_plant_like | 40 | 302 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma14g01229 | Cma-Chr14:9753485 | Cma18g00086 | Cma-Chr18:383549 | 5.94E-89 | dispersed | |
Cma18g00086 | Cma-Chr18:383549 | Cma05g01373 | Cma-Chr5:10326136 | 4.68E-67 | dispersed | |
Cma13g00976 | Cma-Chr13:7605521 | Cma18g00086 | Cma-Chr18:383549 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
69264 | PF00069 | Pkinase | 6.30E-67 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma18g00086 | K20604 | - | csv:101203133 | 558.14 |