Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00086 ATGGCTCAGGTTCGTGATCGCCGCCAGTTGATACTCCGCCTCCCGGACCTCTCCGACTGCGGTCCCCACTTCCCCCTCCCCCTCCCTCCCTCCTCTGCCCCTGCCATCTCCTCCTCCGACCTCGAAAAGCTCCAAGTCCTCGGGCATGGCAACGGCGGCACAGTCTACAAAGTCCGCCACAAGCGCACCTCCAACATCTACGCTCTCAAGGTCGTCCACGGCGATGGCGATCCCACCGTTCGCCGCCAGGTTTTCAGAGAGATGGAGATTCTCCGCCGTACGGACTCTCCTTACGTCGTGAAATGCCATGGAATCTTCGAGAAGCCGTCTGGAGATGTCACGATTTTGATGGAGTATATGGATCTAGGATCGCTTGATACGCTCTTGAAGAAGAATACCACGCTGTCAGAGGCCACCCTCGCTCACGTATCGCGTCAGGTTCTTAATGGCCTTCACTACCTTCACTCTCATAAAATCATTCATCGCGATATTAAACCGTCGAATCTCTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTTAGTAAAATCATGTGCAGGACATTGGATGCTTGCAATTCCTACGTCGGAACCTGCGCTTATATGAGTCCGGAGCGGTTCGATCCAGAGACTTACGGCGGAAATTACAACGGTTACGCCGGAGACATATGGAGTTTAGGCCTTACTCTTCTGGAACTCTATTTAGGCCATTTTCCTTTTCTTCCGCGTGGTCAGAGACCGGATTGGGCGACTCTGATGTTTGCGATTTGCTTTGGTGAGCCGCCGACGCTGCCGGAGGATGCGTCAGAGGAGTTTCGAAGCTTCGTCCAGAGTTGTTTGCAGAAGGAATCGAGCAAGAGATGGACGGCGGCGCAATTATTGACGCATCCGTTTGTGTGTAAGGAATCGTGA 921 52.77 MAQVRDRRQLILRLPDLSDCGPHFPLPLPPSSAPAISSSDLEKLQVLGHGNGGTVYKVRHKRTSNIYALKVVHGDGDPTVRRQVFREMEILRRTDSPYVVKCHGIFEKPSGDVTILMEYMDLGSLDTLLKKNTTLSEATLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPRGQRPDWATLMFAICFGEPPTLPEDASEEFRSFVQSCLQKESSKRWTAAQLLTHPFVCKES 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 383549 384469 - CmaCh18G000860.1 Cma18g00086 313424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00086 306 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 5 305 - -
Cma18g00086 306 SMART serkin_6 41 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00086 306 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Cma18g00086 306 Gene3D Transferase(Phosphotransferase) domain 1 123 306 - -
Cma18g00086 306 ProSiteProfiles Protein kinase domain profile. 41 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00086 306 Gene3D Phosphorylase Kinase; domain 1 30 121 - -
Cma18g00086 306 Pfam Protein kinase domain 42 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00086 306 ProSitePatterns Protein kinases ATP-binding region signature. 47 70 IPR017441 GO:0005524
Cma18g00086 306 SUPERFAMILY Protein kinase-like (PK-like) 39 303 IPR011009 -
Cma18g00086 306 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 305 - -
Cma18g00086 306 CDD PKc_MAPKK_plant_like 40 302 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01229 Cma-Chr14:9753485 Cma18g00086 Cma-Chr18:383549 5.94E-89 dispersed
Cma18g00086 Cma-Chr18:383549 Cma05g01373 Cma-Chr5:10326136 4.68E-67 dispersed
Cma13g00976 Cma-Chr13:7605521 Cma18g00086 Cma-Chr18:383549 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69264 PF00069 Pkinase 6.30E-67 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00086 K20604 - csv:101203133 558.14