Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00089 ATGGTGGCTGATCTCTCCTCTCTTGATCCTTTGCCTAATTGCTTTCATAGCAATGGAACCAATTCCAAAAGAAAAAGACGACCCACGGGCACTCCTGACCCAGATGCGGAGGTGGTGTCTCTCTCTCCCAAAACCCTATTGGAATCAGACAGTTACGTATGTGAAATATGTCATCAGGGTTTTCAGAGAGATCAGAATCTACAAATGCATCGGCGTCGACATAAGGTGCCGTGGAAGCTGTTGAAGAGGACCGAGACGACGACGACGACGACAACGACGCGTAAACGGGTGTTTGTTTGTCCGGAACCGAGCTGCTTACACCATAACCCTACTCATGCTTTGGGGGATTTGGTGGGAATTAAGAAACACTTTAGGAGAAAACATAGTAACCATAAGCAATGGGTATGTGAAAAATGCGCTAAAGGGTATGCTGTTCAATCTGATTACAAAGCTCATCTCAAAACGTGTGGGACTAGAGGCCATTCATGTGACTGTGGTCGAGTTTTCTCAAGGGTGGAGAGTTTCATAGAGCATCAAGATAGTTGCAAATTGGGTCATCATCAACAACCAGAAAAGGAGGCATCTTTACAACCACCACCACCACCACCACCTTGTTTATCAAGAACAGCTTCAAGCCCAACTCCAACTCCTTCTTCAGATACAAATTTCAGCTTCTTAAACCAAACCCACACACCAAAAACTCCCCAAAAACTCATCACCCATCATCAAAATTTGGACCTTCAACTTTCAACCTCTTCAAATTCCATTAAAGTTTCAGTTTCTCCAAAAAAACATGAAAATTACGCAACCCATTTGCAGCTTTCAATTGGGTCTTGCAATTATGGTGAAAAAAATGAACAAAAAGATCATTATCAAATGAATTTTGATGAACAAATTGGAAATGGGTTGAGTTTATTGAAGCTGAAAGAAGAAGCTAAACAGAGAATGAGAGTGGCAAGGGAAGAGAAGGCAGTGGCTGAAGAAGCAAGAAATGAAGCAAAGAAACAGATTGAATTGGCTGAGAAGGAGTTAGCCAATGCCAAGAGAATGAGACAACAAGCTCAAGCTGAGCTACAAAGAGCTCTTGCTTTGAAAGAACACGCCATCAACAAAATCAACTCCACCATCCTTCAAATCACTTGCCAAGTTTGTAGGCAACATTTTCATCCATTGCACAAAACTTGA 1185 42.19 MVADLSSLDPLPNCFHSNGTNSKRKRRPTGTPDPDAEVVSLSPKTLLESDSYVCEICHQGFQRDQNLQMHRRRHKVPWKLLKRTETTTTTTTTRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCAKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDSCKLGHHQQPEKEASLQPPPPPPPCLSRTASSPTPTPSSDTNFSFLNQTHTPKTPQKLITHHQNLDLQLSTSSNSIKVSVSPKKHENYATHLQLSIGSCNYGEKNEQKDHYQMNFDEQIGNGLSLLKLKEEAKQRMRVAREEKAVAEEARNEAKKQIELAEKELANAKRMRQQAQAELQRALALKEHAINKINSTILQITCQVCRQHFHPLHKT 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 406361 408599 - CmaCh18G000890.1 Cma18g00089 313427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00089 394 MobiDBLite consensus disorder prediction 183 231 - -
Cma18g00089 394 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 5 390 - -
Cma18g00089 394 Coils Coil 309 371 - -
Cma18g00089 394 SUPERFAMILY beta-beta-alpha zinc fingers 49 75 IPR036236 -
Cma18g00089 394 Gene3D Classic Zinc Finger 29 101 - -
Cma18g00089 394 PANTHER OS03G0310200 PROTEIN 5 390 IPR039288 GO:0009630
Cma18g00089 394 SMART c2h2final6 98 128 IPR013087 -
Cma18g00089 394 SMART c2h2final6 134 161 IPR013087 -
Cma18g00089 394 SMART c2h2final6 52 74 IPR013087 -
Cma18g00089 394 MobiDBLite consensus disorder prediction 1 38 - -
Cma18g00089 394 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 74 IPR013087 -
Cma18g00089 394 MobiDBLite consensus disorder prediction 194 210 - -
Cma18g00089 394 MobiDBLite consensus disorder prediction 211 231 - -
Cma18g00089 394 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00972 Cma18g00089 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01152 Cma-Chr13:8463470 Cma18g00089 Cma-Chr18:406361 8.10E-161 dispersed
Cma15g00878 Cma-Chr15:4451639 Cma18g00089 Cma-Chr18:406361 3.50E-129 dispersed
Cma18g00089 Cma-Chr18:406361 Cma12g00483 Cma-Chr12:2520186 2.76E-71 dispersed
Cma13g00972 Cma-Chr13:7575429 Cma18g00089 Cma-Chr18:406361 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36736 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00089 K25871 - csv:101210748 575.859