Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00096 ATGCCTGAGAGAAATGTTGTGTCCTGGTCTGCAGTCATTGCTGGGTTCGTCCAACACGGCCGACCCAATGAAGCCCTCTCTCTGTTTAGCCGCATGCATTGTGATGGCACGATAATTCCCAACGAATTCACCCTTGTAAGTGCTCTTCATGCTTGTTCTTTAACTCAGAGGCTGATATGTTCGTACCAAATTTACGCATTAGTTCTTCGCTTAGGATATGGGTCGAATATTTTCCTCATGAATGCGTTCTTAACTGCTTTAATTAGGCATGAGAAATTGCTGGAAGCTTTAGAAGTTTTTGAGAATTCTTCATCCAAGGATATTGTATCATGGAATGCTATGATGGCTGGTTATTTGCAATTATCATATTTTGAACTGCCTAAGTTTTGGCGCCGGATGAATCTCGAGGACATTAAGCCTGATAATTTTACATTTGCTAGTATCTTAACTGGGTTGGCTGCTCTCTCTGAGTTTAAACTGGGTTTGCAAGTTCATGGACTGCTTGTGAAAAGTGGATATGGGAATGATATTTGTGTAGGGAATTCCTTGTGTGATATGTACATTAAGAATCAGAAATTATTAGATGGTTTTAAAGCTTTTGATGAAATGCCTTCAAGTGATGTGTGTTCTTGGACTCAGATGGCTGCAGGGTGCCTCCATTGTGGCGAGCCAATGAAGGCACTCGAGGTCATTTACGATATGAAAAACGTCGGCGTGAGGCTAAATAAGTTCACCCTTGCAACTGCCTTGAATGCTTCTGCTAATTTAGCATCCATAGAAGAAGGGAAGAAATTCCATGGATTGAGAATTAAACTTGGAGCTGATATTGATGTTTGTGTTGATAATGCTCTACTTGATATGTATGCAAAATGTGGATGTATGAGCAGTGCAAATGTTGTCTTTCGTTCAATGGATGAACAATCTGTTGTCTCATGGACTACCATGATTATGGGATTTGCACACAATGGCCAAGCAAAAGAAGCCCTTCAAATCTTTGATGAAATGAGAAAAGAAGGAGCTGAGCCTAATCACATCACTTTTATTTGTGTCCTCTATGCTTGTAGCCAAGGAGGTTTCATTGATGAAGCATGGAAATACTTCTCTTCCATGAGTGCTGACCATGGGATTTCACCCTCTGAAGATCACTATGTATGTATGGTGAATCTCTTAGGCCGAGCTGGGTGTATAAAAGAAGCCGAGGATTTGATCGGACGAATGCTGTTTAAACCGGGTTCTTTGGTCTGGCAAACATTGCTTGGTGCATGCTTAGTTCATGGCGACGTAGAGACGGGAAAACGAGCAGCCGAGCACGCGTTGAATTTGGATCAAAACGATTCATCGACTTATGTTTTGTTATCGAACATGTTTGCGGGCCGGAGTAACTGGGACGCGTCACAACTTGAGGAAAAAGAATCTACAAATCTTCAGATTTCAGTTTTAATCGGAATGTCTTCGTCCGGTGGTAACTCTGGCGACGGAGCTGGCGGTGGCGCCGCCTCGCAGGGCCATCAGCTCTATTTCTGCTATACGTGCAATCGTACGGTAACAATTGCTCACTCATCCTCCTCCGATCTTTTGTGCCCCAACTGCAACGACAGCTTTGTTGAAGAAATGGAAACTCCAAACCCTAACCCTAGCCCTGTTCCCAATCCTTTCGTTTCCTTCACATCCGAGGCATTTCCTCCGTTCAGTACCGGGGGTGGTGGAAATGGCGGTTTCCCGATCATATTTTCCACGTCATCGTCTTCCGGTGGCATTGGTGGTGGCGGTTCTATGGTGAATGATCTCTCGGCGCTGTTGGGAGGCGGTTCTTTTCGATCGTCGTCCTTGCAAGACCCTGACGGTTTTAATCCCTTGCTCTTCCTCCAGAACTATCTTCAAAGCGCTAATGTTCAATTGGTAATCCAAAACGCCTCGGGAGAGGCGTTTCATCCCTCTTCCAATTTCAATCTTGGCGACTACTTCTTCGGCCCCGGCCTTGAGCAGCTGATTCAACAGCTTGCTGAAAACGATCCGAACCGTTATGGAACCCCTCCTGCCTCGAAGTCGGCGATTGAGGCACTTCCAAATATCAAAATTACGGAGGAATTGCTGGCGTCGGATTCTTCACAGTGTGCTGTGTGTAAGGACACATTTGAGCTCAACGAAGAGGCGAAACAGATGCCTTGTAAACACATATATCATGCAGATTGTATCATTCCTTGGCTGGAATTGCATAATTCTTGTCCAGTGTGTCGATATGAATTGCCCACAGATGATCCCGATTACGAGCAAAGGACTCGCGGGACTTCAGCTCCTAATCGAAGTCAAAGCGAAAGTCAACTCTTCGGCGATTCTTCTACTGGTGGGGAAAATTTTGGTGGAAACGATCCGAATTCTGGCGAGAATTCACAGACGCAACAAATGGCTGATCGGAGGGTGAGAAGGATTGCTTTTCCTTGGCCATTCAGAGGTTTTGGTCCAGCTGCTGAAACTAGCGACAGTGGAGGTGGGAACAACAGCGGAAATAGCGACGATCCTAGCTCCAGAAATAGGGGAAGCCAGAACTCTTCAGAGCCTATGGAGGAAGATCTTGATTGA 2580 45.23 MPERNVVSWSAVIAGFVQHGRPNEALSLFSRMHCDGTIIPNEFTLVSALHACSLTQRLICSYQIYALVLRLGYGSNIFLMNAFLTALIRHEKLLEALEVFENSSSKDIVSWNAMMAGYLQLSYFELPKFWRRMNLEDIKPDNFTFASILTGLAALSEFKLGLQVHGLLVKSGYGNDICVGNSLCDMYIKNQKLLDGFKAFDEMPSSDVCSWTQMAAGCLHCGEPMKALEVIYDMKNVGVRLNKFTLATALNASANLASIEEGKKFHGLRIKLGADIDVCVDNALLDMYAKCGCMSSANVVFRSMDEQSVVSWTTMIMGFAHNGQAKEALQIFDEMRKEGAEPNHITFICVLYACSQGGFIDEAWKYFSSMSADHGISPSEDHYVCMVNLLGRAGCIKEAEDLIGRMLFKPGSLVWQTLLGACLVHGDVETGKRAAEHALNLDQNDSSTYVLLSNMFAGRSNWDASQLEEKESTNLQISVLIGMSSSGGNSGDGAGGGAASQGHQLYFCYTCNRTVTIAHSSSSDLLCPNCNDSFVEEMETPNPNPSPVPNPFVSFTSEAFPPFSTGGGGNGGFPIIFSTSSSSGGIGGGGSMVNDLSALLGGGSFRSSSLQDPDGFNPLLFLQNYLQSANVQLVIQNASGEAFHPSSNFNLGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIEALPNIKITEELLASDSSQCAVCKDTFELNEEAKQMPCKHIYHADCIIPWLELHNSCPVCRYELPTDDPDYEQRTRGTSAPNRSQSESQLFGDSSTGGENFGGNDPNSGENSQTQQMADRRVRRIAFPWPFRGFGPAAETSDSGGGNNSGNSDDPSSRNRGSQNSSEPMEEDLD 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 442584 446803 + CmaCh18G000960.1 Cma18g00096 313434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00096 859 MobiDBLite consensus disorder prediction 826 853 - -
Cma18g00096 859 Pfam E motif 425 463 IPR046848 -
Cma18g00096 859 CDD RING-H2_RNF126_like 704 746 - -
Cma18g00096 859 Pfam PPR repeat family 308 354 IPR002885 -
Cma18g00096 859 Pfam PPR repeat family 4 52 IPR002885 -
Cma18g00096 859 Pfam zinc-ribbon 504 538 IPR039525 GO:0061630
Cma18g00096 859 TIGRFAM PPR: pentatricopeptide repeat domain 345 379 IPR002885 -
Cma18g00096 859 TIGRFAM PPR: pentatricopeptide repeat domain 7 37 IPR002885 -
Cma18g00096 859 TIGRFAM PPR: pentatricopeptide repeat domain 310 343 IPR002885 -
Cma18g00096 859 Gene3D Tetratricopeptide repeat domain 263 520 IPR011990 GO:0005515
Cma18g00096 859 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 5 39 IPR002885 -
Cma18g00096 859 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 467 - -
Cma18g00096 859 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Cma18g00096 859 MobiDBLite consensus disorder prediction 756 859 - -
Cma18g00096 859 SUPERFAMILY RING/U-box 685 753 - -
Cma18g00096 859 ProSiteProfiles Zinc finger RING-type profile. 705 746 IPR001841 -
Cma18g00096 859 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 667 752 IPR013083 -
Cma18g00096 859 MobiDBLite consensus disorder prediction 760 804 - -
Cma18g00096 859 Pfam PPR repeat 282 307 IPR002885 -
Cma18g00096 859 Pfam PPR repeat 383 407 IPR002885 -
Cma18g00096 859 Pfam PPR repeat 210 239 IPR002885 -
Cma18g00096 859 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Cma18g00096 859 Gene3D Tetratricopeptide repeat domain 1 62 IPR011990 GO:0005515
Cma18g00096 859 Gene3D Tetratricopeptide repeat domain 156 262 IPR011990 GO:0005515
Cma18g00096 859 Gene3D Tetratricopeptide repeat domain 63 155 IPR011990 GO:0005515
Cma18g00096 859 SMART ring_2 705 745 IPR001841 -
Cma18g00096 859 PANTHER OS07G0578800 PROTEIN-RELATED 1 467 IPR045215 GO:0003723|GO:0009451
Cma18g00096 859 Pfam Ring finger domain 704 746 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00096 - - - csv:101211489 865.914
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00285 Cma-Chr6:1381447 Cma18g00096 Cma-Chr18:442584 4.66E-33 dispersed
Cma06g00336 Cma-Chr6:1571748 Cma18g00096 Cma-Chr18:442584 7.15E-15 dispersed
Cma14g00131 Cma-Chr14:548928 Cma18g00096 Cma-Chr18:442584 9.79E-33 dispersed
Cma15g00786 Cma-Chr15:3924330 Cma18g00096 Cma-Chr18:442584 1.30E-72 dispersed
Cma18g00096 Cma-Chr18:442584 Cma03g00107 Cma-Chr3:1105457 9.27E-07 dispersed
Cma20g00005 Cma-Chr20:13841 Cma18g00096 Cma-Chr18:442584 1.26E-47 dispersed
Cma13g00964 Cma-Chr13:7534565 Cma18g00096 Cma-Chr18:442584 0 wgd
Cma15g00268 Cma-Chr15:1277797 Cma18g00096 Cma-Chr18:442584 5.60E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g965 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0364 . Lsi02g00268 Csa01g00746 Chy12g01366 Cme12g01798 . . Bda11g01566 . . . . . . . . . Cma18g00096 . Car18g00085 Cpe09g01095 . Bhi08g01339 . . . Hepe07g2325 . . Cla01g01466 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012247 1 4 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00096 Cma_Chr18 FPKM 12.140117 13.17083 13.338849 13.207137 11.629083 10.148174 11.320155 14.011625 13.861403 12.125063