Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00098 ATGTCCCCGTCAAATAGTTCGTCAAGTGGAGTTAGTGGACATGGCGGACCGAATTACATAGAACATCAAATTTCCAAAATGGATACTCTCGCCGGCATCGCCATTAAGTATGGAGTCGAGGTGGCTGACATCAGGAGGTTGAATGGCTTGGCAGCAGATCTTCAAATGTTTGCTTTGAAGAAATTGAGAATTCCTCTACCAGGAAGACATCCACCATCACCCAGCTTGTCTGATGCTTCTACTGTTACAGGAAGTGGATCTGTAAATGAAGAACCTCTACATCTAGGCCAACCAACTGATATGCTAAACTCTTTGCAATCTTCAAGATTGAAATCACCGAACCCGAAAGCCTCCCCTGCCATGAGCACATTACAAAAATATTATGGTCTAGTGTCACGAACAGTCGAGAATGCTCCCAAAGGAATGGAGATGGCATTATACAAAACTGAGAACTCAAATTTCATTGATGATGGGTTGTTTCCCAAAACCTCTGAGCTTTCTACACCACCTTCAAACATTCACTCGAAGACCAGGAAATACGCCGGTAGTATCTGGCCTGAGAACGACTCAATAACCGAACATCTATTATGTACAGAACCTGGAGATGGAGAGAGTGAAAAATCTGATGAGAAGCTGGTTCGCAGGCGTCAAAAGGCTGAAAATGGCGTTGGCGCCCCAGAAAGATCGTCGAAGGGCGAGAATAGTGGCGGAAGCTTCTTTTCTGGTTCAAATGGGAAGAGTTTAGCCATGAGGCTAAAATCAGTTAGCAGATCAATGTTGCTATCGGATTCGGATCCAGTTCGGATAAACTCGATTCCAGTAGGATTAGGAGATGCTATAATTACTGATGGCATTTCTGAAGTTCATAAATCACTAAGTACATCAAACCTGAGAGACCAAGATAGCAGTAGCAGCAGTTCAGCATCTGTGTGGGCAACAACAAGGTGGAGTTTAAAGCCGGACTTGCAAGCTCTCTCAAGTGCTTCAATCACAAAGCCACTCTTCGATGGTTTGCCAAATCCAATCACAGGGCGCAGGAACAAAGCAGCTCTTGATTAA 1059 44.38 MSPSNSSSSGVSGHGGPNYIEHQISKMDTLAGIAIKYGVEVADIRRLNGLAADLQMFALKKLRIPLPGRHPPSPSLSDASTVTGSGSVNEEPLHLGQPTDMLNSLQSSRLKSPNPKASPAMSTLQKYYGLVSRTVENAPKGMEMALYKTENSNFIDDGLFPKTSELSTPPSNIHSKTRKYAGSIWPENDSITEHLLCTEPGDGESEKSDEKLVRRRQKAENGVGAPERSSKGENSGGSFFSGSNGKSLAMRLKSVSRSMLLSDSDPVRINSIPVGLGDAIITDGISEVHKSLSTSNLRDQDSSSSSSASVWATTRWSLKPDLQALSSASITKPLFDGLPNPITGRRNKAALD 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 452059 455953 + CmaCh18G000980.1 Cma18g00098 313436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00098 352 Pfam LysM domain 24 65 IPR018392 -
Cma18g00098 352 MobiDBLite consensus disorder prediction 199 242 - -
Cma18g00098 352 CDD LysM 20 64 IPR018392 -
Cma18g00098 352 SMART LysM_2 21 65 IPR018392 -
Cma18g00098 352 MobiDBLite consensus disorder prediction 65 100 - -
Cma18g00098 352 MobiDBLite consensus disorder prediction 199 222 - -
Cma18g00098 352 PANTHER PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEIN 6 352 - -
Cma18g00098 352 MobiDBLite consensus disorder prediction 74 92 - -
Cma18g00098 352 PANTHER LOC443603 PROTEIN-RELATED 6 352 IPR045030 -
Cma18g00098 352 SUPERFAMILY LysM domain 20 65 IPR036779 -
Cma18g00098 352 ProSiteProfiles LysM domain profile. 20 64 IPR018392 -
Cma18g00098 352 Gene3D LysM domain 5 72 IPR036779 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00098 - - - bhj:120082771 555.058
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00253 Cma-Chr1:1169393 Cma18g00098 Cma-Chr18:452059 2.03E-77 dispersed
Cma12g01070 Cma-Chr12:8463624 Cma18g00098 Cma-Chr18:452059 3.05E-06 dispersed
Cma17g00989 Cma-Chr17:7258244 Cma18g00098 Cma-Chr18:452059 4.60E-43 dispersed
Cma18g00098 Cma-Chr18:452059 Cma14g00970 Cma-Chr14:5082032 3.96E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g963 . . . . . . . . . Cmo18g00074 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00269 Csa01g00748 Chy12g01364 Cme12g01796 . . . . . . . . Sed08g2795 . . . Cma18g00098 . Car18g00087 Cpe09g01093 . Bhi08g01343 Tan05g2145 . Lac10g0322 . . . Cla01g01464 Cam01g1531 Cec01g1572 Cco01g1619 Clacu01g1556 Cmu01g1446 Cre01g1368 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012579 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 4 2 0 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00098 Cma_Chr18 FPKM 8.552909 9.304185 6.680039 7.511776 6.470936 5.92125 5.970272 4.74598 4.852468 4.746085