Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00101 ATGGAGGAGAAAGGAGTTGAGGATGATGTAGTAAAGCGTTTGGATTGTGAACGCGATCCAAATCAGAAGAACAGGCAGAGATTTGGGGGAGTAGGTGGAGTACTGTCGATCGAGCAGTTCTTTGAAGACCAAGAAGTTCCTTCATGGAGGAAGCAGCTAACATTTAGGGCTTTTTTCGTCAGTTTTTGGCTGAGCATTTTGTTCAGCGTTATTGTAATGAAACTCAATCTAACCACTGGCATTATACCTTCACTCAACGTATCTGCTGGTCTGTTAGGATTTTTCTTCGTCAAATCATGGACGAAATTTTTGGAGAGGTCAGGCTTCTTGAGGCAGCCTTTCACCAGGCAGGAGAACACCGTCATCCAAACCTGCGTCGTTGCCTCGTCTGGCATCGCTTTCAGCGGAGGTTTNAGTTACTTATTTGGAATGAGCGAACGGATTGCTCATAAATCATCAGGCAGCAAAGATTTCAAAGATCCATCATTAGGATGGATGATTGGGTTTCTATTTGTTGTTAGCTTTCTTGGCCTTTTCTCGGTTGTACCCTTGCGAAAGATCATGGTCATAGACTTCAAATTAACTTATCCAAGTGGTACTGCAACTGCTCATTTGATTAATAGTTTCCATACTCCCCGAGGAGCTGCACTAGCAAAGTTTTACTTTGACTTCTCAACAACATATATTGGAGTAGGGATGATTTGCCCCCACATAATAAATGTATCTGTGCTTGTTGGAGGAATTATCTCTTGGGGCATAATGTGGCCTCTCATAGAAGAAAAAAAAGGTCAATGGTATAGTGAGAAATTGAGCTCAGACGACCTAAGTGGACTTGAAGGTTACAAGGTATTTATAGCAATAGCCATAATTCTTGGTGATGGCCTGTACAACTTCTTCAAAGTATTGACTCGGACCCTCTCCGGCTTGCTCCACCAACTTAGACACAAAAGAGATACCGAAGAGTTATCCTCGGAAAATTCATCCAGGTCTGAGTTATCTTATGATGATGAACGAAGGAAACAACTTTTTCTGAAGGATCAAATACCAATCTGGTTTGCCATTGGAGGCTATGTCATGATTGCTGTAGTGTCGATTAATACTCTTCCGCACATTTTTACCCAGCTGAAGTGGTATTATATCGTCGTCATCTACATCTTTGCTCCTGTCTTGGCCTTCTGTAATGCATATGGATGTGGACTCACGGATTGGTCTCTGGCATCCACTTATGGAAAGCTTGCCATTTTCACCATTGGTGCCTGGGCTGGACCTTTGCATGGGGGAGTTGTTGCTGGTCTATCAGCTTGTGGGGTCTTGATGAATATTGTCTCCACTGCCTCTGACCTAATGCAGGATTTCAAGACTGGCTATCTAACTTTGGCTTCACCTCGATCCATGTTTGTCAGCCAAGTAGTAGGCACAACAATGGGCTGCATTATTTCCCCTTGTGTCTTTTGGCTCTTTTACAAGGCATTTGATGATCTTGGTCTTCCAACTGGTGAATACACTGCACCTAATGCAGTTCTTTTTCGCAACATGGCCGTGTTAGGTGTTGAAGGTGTCTCGAGTCTACCAAAGAATTGTATGACCTTATGTTACGTGTTCTTTGCCACCTCCATTTTGATTAACTTGATTAAAGACTTGATACCAAAGAAGTGGGCAAGGTTCATTCCTCTACCAATGGCAATGGCAATACCATTCTATATAGGGCCGTACTTCACAATTGATATGAGCCTTGGAAGTCTGATATTGTTTGTGTGGCAGAAGCTAAACAAAACCAAGGCCGATGCCTTCGGTCCAGCTGTCGCATCGGGTTTGATATGTGGGGATGGGATTTGGACTTTGCCGAGTTCAATTCTGGCTTTAGCGGGAGTCAAGGCACCAATATGCATGAAGTTCCTATCAAGCTCAAACAACGCAAAAGTAGATAAGTTCCTAAGCTCGTCCATCTGA 1950 43.28 MEEKGVEDDVVKRLDCERDPNQKNRQRFGGVGGVLSIEQFFEDQEVPSWRKQLTFRAFFVSFWLSILFSVIVMKLNLTTGIIPSLNVSAGLLGFFFVKSWTKFLERSGFLRQPFTRQENTVIQTCVVASSGIAFSGGXSYLFGMSERIAHKSSGSKDFKDPSLGWMIGFLFVVSFLGLFSVVPLRKIMVIDFKLTYPSGTATAHLINSFHTPRGAALAKFYFDFSTTYIGVGMICPHIINVSVLVGGIISWGIMWPLIEEKKGQWYSEKLSSDDLSGLEGYKVFIAIAIILGDGLYNFFKVLTRTLSGLLHQLRHKRDTEELSSENSSRSELSYDDERRKQLFLKDQIPIWFAIGGYVMIAVVSINTLPHIFTQLKWYYIVVIYIFAPVLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGPLHGGVVAGLSACGVLMNIVSTASDLMQDFKTGYLTLASPRSMFVSQVVGTTMGCIISPCVFWLFYKAFDDLGLPTGEYTAPNAVLFRNMAVLGVEGVSSLPKNCMTLCYVFFATSILINLIKDLIPKKWARFIPLPMAMAIPFYIGPYFTIDMSLGSLILFVWQKLNKTKADAFGPAVASGLICGDGIWTLPSSILALAGVKAPICMKFLSSSNNAKVDKFLSSSI 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 476546 481516 - CmaCh18G001010.1 Cma18g00101 313439

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00101 649 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 219 646 IPR045035 GO:0035673
Cma18g00101 649 PANTHER METAL-NICOTIANAMINE TRANSPORTER YSL8-RELATED 219 646 - -
Cma18g00101 649 PANTHER METAL-NICOTIANAMINE TRANSPORTER YSL8-RELATED 19 219 - -
Cma18g00101 649 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 19 219 IPR045035 GO:0035673
Cma18g00101 649 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 220 620 IPR004813 GO:0035673
Cma18g00101 649 Pfam OPT oligopeptide transporter protein 218 619 IPR004813 GO:0035673
Cma18g00101 649 Pfam OPT oligopeptide transporter protein 52 215 IPR004813 GO:0035673
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00101 - - - csv:101211969 1154.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00959 Cma18g00101 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02997 Cma-Chr4:19609442 Cma18g00101 Cma-Chr18:476546 0 dispersed
Cma16g00028 Cma-Chr16:134110 Cma18g00101 Cma-Chr18:476546 0 dispersed
Cma18g00101 Cma-Chr18:476546 Cma18g01334 Cma-Chr18:10176428 0 dispersed
Cma13g00959 Cma-Chr13:7510416 Cma18g00101 Cma-Chr18:476546 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g954 . . . . . . . . . Cmo18g00078 . . . . . Cpe20g00180 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed08g2805 . . Cma13g00959 Cma18g00101 Car13g00795 Car18g00091 . . Bhi08g01350 Tan05g2138 Cmetu04g2126 Lac10g0326 Hepe07g2321 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001400 2 2 2 3 2 2 3 2 2 3 2 2 3 3 3 3 2 1 3 2 3 2 2 1 2 3 2 6 4 2 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00101 Cma_Chr18 FPKM 3.660919 4.760613 7.657985 7.442229 5.958185 5.794981 6.974542 2.695079 1.963584 2.973563