Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00102 ATGAAGATAAAAGCTATTGTCCACTGGAAGAACAAACCCTGCTCTTCATCGCTGTACTCCCTTCGACTCTCTCGCCGATTAAAATGGGTACAAAAAACGATGCAGTGTGCTCTTGAAAAAAGTAGTGAATTTCAGAAAGTTCCAGACAAAGGAAAGCAGTTATTAGAAGTGAAAATTCAGGAAGATAATTGTTCAAGAAGAATTAAGGATTCTGAAGTTTCTTCTTTTGAATGGAGGAACTTTTTTGATTACAGATCTGCCGTCATTAGTATTCTTACACTGGAATCTGATGGGCTCTGGAGAATTGTTGCACTACCATTGCAAGGCCTAGATAGCTTGCATGTGAGCTGCCTGCCTCAAATGAATCAGTTTACAGCTGATAGAAAATTGGTGCACAACGGCCCTGCCTCTAATGGCACATACTCAGTGAATTCATTCAGATGTAGAAGCTTGTTGGAGTCGAATAAAAACTTATTGGATAGTAAAGCATTTAAGTCGTCAAATAAAGCTTCCTGCAAATTCTCTTGGAGGAGTTCATGCTCCAGCTCTGCTTTGATATCAGGTGACTCTAGTGCAATCTCTGACATCCCCATTGGTGAAGATAAAATTCAGAGATATGGGAAGAAAAATTCAAGAAAGAAGGCAAAAAAGAGGGATATAGAATGTAAGAAGACATCTTCTGATTTTGTCTCTGCTGAAACAGAAGTCTCGTCCGAGGATTCTGCTCGTGAAAGTTCATTGTTAGAAGTTCGTGGCAATAATGGTTCAGATTGTAGAGATGGATCTGTTTTGTGTTCGACGGCACGAGAAACTTTCCCGTCAGATTCTCGGGCCAGTAAAAATGATTTTAAACGAGATTCTGAGAGGATTATTCAGCCACTTGGAACCACAGATTCAATATCCTCTGAAATTGTTGAGGGGGATGCATCTGAGATTCCACCTTCTGCAACAAAGAATTCTATTGGGGATTATAATGGTTATGGATCTGAAAATCAGCCCCTTATCAAAGCACCTGGTTGTACCCGTTTCGATGGGGAAGTAGATCGAAAAGAAAGGCTATTTAATGGCTGTTGCAATGATTTTTGCACTAAGGATTCTTTTGATAATAATTCCCCAGATTCTAACTGTGATAGTCATACCTTGAAATTAACTGAAAATGAGGGTTTTGGAATTGATCTCTTGGAAGGACAGAATTCCCCTTCTAGAGAGAATGATTGTTCTCATCACAACTCCGTAAGAGATGGAGTGGACGTTAATGCCGAAGCAGAGAAAGCTAATCATGGTATTCAGGGATGTACTGCTAGTGAAACGTGCTTGATTTTACCTGGAAAGAAAACTAAACAGAATAAAAAATTGTCTGGGAATTCTAGGACGAACAGATTTGGTGGTATGGGGAGTTCGCAACGGTGTACCGGGAAGGAAAACAGCCGTACTGTCTGGCAAAAGGTTCAAAAGAACAACAGTGGTGGATGTTGTGCACAGTTGGACCAGGTAAGTCCTATTAGCAAACAGTTAAAAGGCATATGTAATCCTGTTGGTGTGCAAACGCCAAAGGTCAAGGATAAAAAAACTGGGAATAGAAAACAACTGAAAGACAAATTTTCCAAGAGGTTGAAAAATAAGAATAGTTCAGAACAAGATAAGATCTATCGTCCTAGTAAGAGTAGTAGTGGTAGTAATACTAATTCAATGGCGCACAATCGACCAAATGAAAGATTGGTTATTCCAGCTATGGGCTTTGACATGAGTAAATCAAGTAGCGGTTCAAGAGCTCCGTTTCAGAATGATTCTACTGATAAATTCATGACTTCTGAATCGTCTGAAAGTACGCAGGTCTGTCTGGATGGGTCGATGTCAGACAAACTTATCTCCGATGGTTTGAATAATCAAAGAGTAGAGAATGAGTCCAGCACATCGCTCGGGTCATGCAGCTCCGTAAATCAGTCAAATCCGTTAAAGGCTCAGTCTCCTGTTTACGTTCCTCATCTTTTCTTTCAAGCAACAAAAGGAAGTTCACTTGCTGAACGCAGCAAGCACAGCAACCAATCTAGATCACCTCTTCAAAACTGGGTGCCAAGTGTGGCAGAGGGTTCCAGATTGACGACTGCGTTGGCCAGACCTGATTTTTCATCTCTGAAAGATGCAAATAAGCAACCTGCTGAGTTCGGTATTTCAGAAAAATCAATTCAAGAAAGTGTCAATTGCAACTTACTAGATCCTGTTTCTAATGTTATTGAGGCGATACAGCATTCTAGAGATGGAAATCATGATCCTCTAGAAAAGGAATGCGAGGCGCAGGAGTCGCACGGTCATGATACAAACGCATTACAGGATCATAGGTGCGAGCTTGATGTGGATGAGCATTTTAATTGCAAAGCCACATGTGGAGATGCAACAAGAATTGAACAGGTAGTGAATAGTGCATGTAAGGCACAATTGGCATTTGATGCTGTTCATCAAATTGCAGAGTTCGAAAGATTCCTTCATTTGTCCTCTCCTGTTATTAGCCAAAGACCCAACTTAAGAAGTTGTGAAATTTGCTCAAAAAATTCGCTAGGCGATGTGATACCGTGTAGCCACGAGACTGCCAACATTTCTTTGGGTTGCCTGTGGCAATGGTATGAAAAACATGGCAGCTATGGCTTAGAAGTAAAAGCCAATGGTCATGAAGGTTCAAATGGATTTGGTGCTGATAACTCTGAATTCCATGCATATTTTGTTCCGTTTCTTTCGGCTGTTCAACTATTTAAGAGCCATAAAACTCATTCTGGAGCAACTACTTGTCCTGTGGGTTTAGATTCACGTGTAAGCGATATAAAAGCGAACGAGCCCCCAACTTCTCAACTTCCAATATTTTCAGTCCTTTTCCCCAAGCCTTGTACTGATAATGCCAACGTTCTCCAGGCCTGTAGTCAGCTTCATAGTTCAGAGGAATCTTTGGCTTCTGAGAAGAGGAACTTTTCTGAACAATCTGTTGACTCAAATTTATCTGGAGAGTCGGAACTTATTTTCGAATATTTTGAGGAGGAACAACCTCAGCAAAGAAGGCCGTTGTTTGATAAAATACGTCAGCTGGTCAAGGGAGATGGATGTCTTCGAGGAAAAATATATGGGGATCCAACCGTGCTCGAGTCCATTACTTTGAATGATCTGCACGCTGGATCATGGTACTCAGTGGCATGGTATCCCATTTATAGGATACCTGATGGCAACCTTCGAGCTGCATTTTTGACTTACCACTCACTAGGACATTTCGTTTGTAGAACTTCCCAATCTAGCTCCTCAGAAACTGATTCTTGTATAGTATGTCCAGTTGTGGGTCTTCAAAGTCATAATGCACAGAATGAATGCTGGTTCAAGCCAAGAATCAGTACGTCGACGTTTAATCCTCCCGGAGTCGTTGACGAACGCCTGAGGACGCTGGAAGAGACAGCATCCCTCTTGGCGAGAGCCGTTGTTAAGAAAGGAAATCTCAACTCCAGAAACAGACATCCAGACTACGAGTTCTTCCTCTCACGACGATGCTAG 3528 41.5 MKIKAIVHWKNKPCSSSLYSLRLSRRLKWVQKTMQCALEKSSEFQKVPDKGKQLLEVKIQEDNCSRRIKDSEVSSFEWRNFFDYRSAVISILTLESDGLWRIVALPLQGLDSLHVSCLPQMNQFTADRKLVHNGPASNGTYSVNSFRCRSLLESNKNLLDSKAFKSSNKASCKFSWRSSCSSSALISGDSSAISDIPIGEDKIQRYGKKNSRKKAKKRDIECKKTSSDFVSAETEVSSEDSARESSLLEVRGNNGSDCRDGSVLCSTARETFPSDSRASKNDFKRDSERIIQPLGTTDSISSEIVEGDASEIPPSATKNSIGDYNGYGSENQPLIKAPGCTRFDGEVDRKERLFNGCCNDFCTKDSFDNNSPDSNCDSHTLKLTENEGFGIDLLEGQNSPSRENDCSHHNSVRDGVDVNAEAEKANHGIQGCTASETCLILPGKKTKQNKKLSGNSRTNRFGGMGSSQRCTGKENSRTVWQKVQKNNSGGCCAQLDQVSPISKQLKGICNPVGVQTPKVKDKKTGNRKQLKDKFSKRLKNKNSSEQDKIYRPSKSSSGSNTNSMAHNRPNERLVIPAMGFDMSKSSSGSRAPFQNDSTDKFMTSESSESTQVCLDGSMSDKLISDGLNNQRVENESSTSLGSCSSVNQSNPLKAQSPVYVPHLFFQATKGSSLAERSKHSNQSRSPLQNWVPSVAEGSRLTTALARPDFSSLKDANKQPAEFGISEKSIQESVNCNLLDPVSNVIEAIQHSRDGNHDPLEKECEAQESHGHDTNALQDHRCELDVDEHFNCKATCGDATRIEQVVNSACKAQLAFDAVHQIAEFERFLHLSSPVISQRPNLRSCEICSKNSLGDVIPCSHETANISLGCLWQWYEKHGSYGLEVKANGHEGSNGFGADNSEFHAYFVPFLSAVQLFKSHKTHSGATTCPVGLDSRVSDIKANEPPTSQLPIFSVLFPKPCTDNANVLQACSQLHSSEESLASEKRNFSEQSVDSNLSGESELIFEYFEEEQPQQRRPLFDKIRQLVKGDGCLRGKIYGDPTVLESITLNDLHAGSWYSVAWYPIYRIPDGNLRAAFLTYHSLGHFVCRTSQSSSSETDSCIVCPVVGLQSHNAQNECWFKPRISTSTFNPPGVVDERLRTLEETASLLARAVVKKGNLNSRNRHPDYEFFLSRRC 1175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 482755 492318 - CmaCh18G001020.1 Cma18g00102 313440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00102 1175 MobiDBLite consensus disorder prediction 449 473 - -
Cma18g00102 1175 PANTHER DUF789 FAMILY PROTEIN 34 1174 - -
Cma18g00102 1175 MobiDBLite consensus disorder prediction 581 612 - -
Cma18g00102 1175 MobiDBLite consensus disorder prediction 536 569 - -
Cma18g00102 1175 PANTHER PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC 34 1174 - -
Cma18g00102 1175 MobiDBLite consensus disorder prediction 511 530 - -
Cma18g00102 1175 MobiDBLite consensus disorder prediction 582 612 - -
Cma18g00102 1175 Pfam Protein of unknown function (DUF789) 822 1170 IPR008507 -
Cma18g00102 1175 MobiDBLite consensus disorder prediction 549 568 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00102 - - - cpep:111801730 2163.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00102 Cma-Chr18:482755 Cma15g00927 Cma-Chr15:4880285 1.06E-16 dispersed
Cma18g00102 Cma-Chr18:482755 Cma20g00553 Cma-Chr20:2685507 2.43E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g952 . . . . . . . . . Cmo18g00079 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00276 Csa01g00754 . Cme12g01789 . . . . . . . . . . . . Cma18g00102 . Car18g00092 Cpe09g01088 . Bhi08g01351 Tan05g2137 . . . . . Cla01g01459 Cam01g1526 Cec01g1567 Cco01g1614 Clacu01g1550 Cmu01g1440 Cre01g1362 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008692 0 4 0 0 0 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 4 2 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00102 Cma_Chr18 FPKM 6.056648 6.340473 8.785021 10.170191 13.429285 13.035537 13.180686 12.907029 11.387747 11.906623