Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00104 ATGGAAGTCGATTCTTTGGTCTCTTTGTTCCGTTGGTCGTTTCTCGGTCGGAAGGCGATTCCGGCCGGTGGCCGCGGACCACGATTTCGTAGTCTTGGTGTTCGAAGCCCTCTAATGAACTCTTTCGAGAAAACGCCTGAAAGGCGCTTACCTATTTATTCCGATGGCTCTCCCTCTTCTTACGGTAAAGATCATTCAAAATTGGGGCACAAGAAGCAATTAATCAGGAAACGAGGCGGATTTGTATTTCGAATTTACGAGCATGTTAAATTGGGGCCTAAATTCTCGGTTACTGCCAAAGGAAAATTGAGATTAGGGGCAAAAATTATACGACAAGGTGGTAGAAAGAACATATTCAAACATGCTTTTGGGATTGTAGAAGGAGAAGAGCTTTTGAAGGCCTCTCAATGTTACTTATCAACAAGCGCAGGACCCATTGCAGGACTTCTTTTCATGTCCACACACAGGGTTGCTTTCTGCAGTGAGCAAAGTATCACTTTCCCTTCACCAACTGGAGAACTGATCAAAACTCAGTACAAGGTTATGATACCATTAAAGAAGGTCATAAAGGCCAACCAAAGCGAGAATGTTAGTGAGCCAGATATGAAGTATATAGAAGTGGTGACGGATGACAACTTTGATTTCTGGTTTATGGGATTCTTGAGATATGAGAAGGCATTTAAAAGTCTCCGGAAGGCCATTTCCATGGCTAACAGATGTTGA 723 43.15 MEVDSLVSLFRWSFLGRKAIPAGGRGPRFRSLGVRSPLMNSFEKTPERRLPIYSDGSPSSYGKDHSKLGHKKQLIRKRGGFVFRIYEHVKLGPKFSVTAKGKLRLGAKIIRQGGRKNIFKHAFGIVEGEELLKASQCYLSTSAGPIAGLLFMSTHRVAFCSEQSITFPSPTGELIKTQYKVMIPLKKVIKANQSENVSEPDMKYIEVVTDDNFDFWFMGFLRYEKAFKSLRKAISMANRC 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 495407 497314 + CmaCh18G001040.1 Cma18g00104 313442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00104 240 PANTHER OSJNBA0038O10.18 PROTEIN 62 235 - -
Cma18g00104 240 SMART gram2001c 117 195 IPR004182 -
Cma18g00104 240 Gene3D - 115 235 IPR011993 -
Cma18g00104 240 PANTHER GEM-LIKE PROTEIN 2 62 235 IPR037848 -
Cma18g00104 240 Pfam GRAM domain 119 238 IPR004182 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00104 - - - csv:101206983 331.643
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00104 Cma-Chr18:495407 Cma18g00814 Cma-Chr18:7113282 2.02E-58 dispersed
Cma18g00104 Cma-Chr18:495407 Cma15g00795 Cma-Chr15:3964777 1.28E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g929 . . . . . . . . . Cmo18g00080 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00756 . . . . . . . . . . . . . . Cma18g00104 . . Cpe09g01087 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000142 3 13 4 2 2 7 4 7 7 6 6 6 11 8 8 11 6 2 9 6 8 5 5 6 8 8 6 15 13 9 211
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00104 Cma_Chr18 FPKM 34.753578 39.054146 14.409245 15.271295 5.355371 5.042476 6.487173 59.81419 58.838577 65.064209