Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00109 ATGGAATACATGGTAGACACCAACTCGAGAATCGAATCAACTCTGGTGGGAGCAGCAGATATGTCTGCAGTGGAAGAGAAGCTAGAGGAAATCGAACCTTCAACAAGGAATAATGAGGAGCCAGTGGAAGAAGATGATGAAGAGGAGGACCTTTCGTGGTCATCAGACTCTGAGATTGGAGAAGCATTGGACTGGTTGGATGCTAAGGAAGATCGTGAGGCAGATGGGGCTTTTTCACTCAATGCTAGGCGTCCTAATGCTCATGGTGGGCTTTATTCTCGTCATAATTCCTCAACTCTTCAACCTCTCTCAAATCGAAACCAGAAGTTTACCAATCATATTCGAGCTTCACCTCTTGGGGAATGGGAAGGGAGGTTTAATGTAGGAATGTCAAACTCTGTTACCACTGCCATTCGTGACAGTGTCAAGGAAATGGCGATAGGAAAAACGAAAACTACAGAGAAAGCTGATCGTGCAACTGTCGAACAGGCAATAGATCCTAGAACTCGGATGGTTTTATTCAAGATGCTCAATCGAGGCGTTTTTCATGACATTAATGGCTGCATTTCTACTGGGAAAGAAGCTAATGTCTATCATGCAACAAAATCCGATGGTCAAGAATTTGCTGTCAAAATCTACAAAACTTCAGTTTTGGTGTTTAAGGATAGGGATCGCTATGTCCAAGGCGACTACCGTTTCCGACACGGATATTGCAGGCATAATCCCAGGAAAATGGTTAAGACATGGGCCGAGAAGGAAATGAGGAACTTGATGAGGTTAAAAGCTGCAGGAATTAGATGCCCGACTCCTCTCCTCTTGAGATTGCATGTGTTGGTCATGGAATTCATCGGTAAGACAGGTTGGGCTGCACCTCGTCTCAAGGATGCTGCCTTGTCGTTGAACAGGTTACGTGAAAGTTATTTGGAGGTTATTATTACAATGCGGACCCTCTACCAGAAATGCAAGCTAGTGCATGGAGATCTTAGTGAATATAACATACTTTATTTTGAGGGTCACCTTTATATTATAGATGTTTCTCAATCTGTTGATCTCGACCACCCTCATGCCCTCGATTTCCTTCGTGAAGATTGTCTTCACGTTTCTGATTTCTTCAAAAAACATGGTGTTGCTGTAATGACAATACGAGAGCTGTTCGATTTTATAGTCGATCCATGTCTCACTGATGAGACGATTGATAGTTATCTGGAGGAGTTGCAAGAAAAAATCTCGGCAAGAGGTGATATATCAGTGGAGGATGAGATTGCAGATTCTGTATTTGTACAGTCGTATATTCCGAAGACGTTGGATAGTGTCAAACATGCTGAGGAGGATGTAATACGTTTAACAAGTGGTCAGAACACTGAAGATATGTACTACAAGACCATTACAGGGTTAAAACAGGCTCTTCCAAGAGTTCAACCTACATCAGAGCTAGAACACGACACAGACCCGATTGAACAGTCCGAAAACTTAACCAGTTTGTCAAATTCTTGCGAGAAGGAAACCGAATCAATGTCAGAGGTAGATGAAGAGAGCTCGGATGAGTCGGAAGAAGAAGACGGACCAAGTTCTTCAACTGAGACGACAACTCAAACACCAGCTGAGAGGAAAGCTGCCAGAAAAGAGAACAAAAAGAAGGTGAAGGAAGAGAAGAGAGAGTCCCGCAAAAACAAGGTTCCAAAGGCTGTAAAGAAGAGGAAGAAGAAATTGGCTAAGTCCCACAAGTAA 1728 43.11 MEYMVDTNSRIESTLVGAADMSAVEEKLEEIEPSTRNNEEPVEEDDEEEDLSWSSDSEIGEALDWLDAKEDREADGAFSLNARRPNAHGGLYSRHNSSTLQPLSNRNQKFTNHIRASPLGEWEGRFNVGMSNSVTTAIRDSVKEMAIGKTKTTEKADRATVEQAIDPRTRMVLFKMLNRGVFHDINGCISTGKEANVYHATKSDGQEFAVKIYKTSVLVFKDRDRYVQGDYRFRHGYCRHNPRKMVKTWAEKEMRNLMRLKAAGIRCPTPLLLRLHVLVMEFIGKTGWAAPRLKDAALSLNRLRESYLEVIITMRTLYQKCKLVHGDLSEYNILYFEGHLYIIDVSQSVDLDHPHALDFLREDCLHVSDFFKKHGVAVMTIRELFDFIVDPCLTDETIDSYLEELQEKISARGDISVEDEIADSVFVQSYIPKTLDSVKHAEEDVIRLTSGQNTEDMYYKTITGLKQALPRVQPTSELEHDTDPIEQSENLTSLSNSCEKETESMSEVDEESSDESEEEDGPSSSTETTTQTPAERKAARKENKKKVKEEKRESRKNKVPKAVKKRKKKLAKSHK 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 534850 539480 - CmaCh18G001090.1 Cma18g00109 313447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00109 575 MobiDBLite consensus disorder prediction 487 501 - -
Cma18g00109 575 MobiDBLite consensus disorder prediction 77 106 - -
Cma18g00109 575 SMART rio_2 154 390 IPR000687 GO:0004674|GO:0005524
Cma18g00109 575 MobiDBLite consensus disorder prediction 473 575 - -
Cma18g00109 575 CDD RIO1_euk 185 374 - -
Cma18g00109 575 Pfam RIO1 family 196 383 - -
Cma18g00109 575 MobiDBLite consensus disorder prediction 39 55 - -
Cma18g00109 575 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO1 42 573 - -
Cma18g00109 575 Coils Coil 537 557 - -
Cma18g00109 575 MobiDBLite consensus disorder prediction 16 57 - -
Cma18g00109 575 MobiDBLite consensus disorder prediction 558 575 - -
Cma18g00109 575 MobiDBLite consensus disorder prediction 504 522 - -
Cma18g00109 575 Gene3D Phosphorylase Kinase; domain 1 182 284 - -
Cma18g00109 575 Gene3D Transferase(Phosphotransferase) domain 1 290 431 - -
Cma18g00109 575 SUPERFAMILY Protein kinase-like (PK-like) 185 370 IPR011009 -
Cma18g00109 575 PIRSF STPK_RIO1 8 575 IPR017407 GO:0004674
Cma18g00109 575 MobiDBLite consensus disorder prediction 23 38 - -
Cma18g00109 575 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO1 42 573 - -
Cma18g00109 575 MobiDBLite consensus disorder prediction 91 106 - -
Cma18g00109 575 ProSitePatterns RIO1/ZK632.3/MJ0444 family signature. 323 334 IPR018935 GO:0004674|GO:0005524
Cma18g00109 575 MobiDBLite consensus disorder prediction 534 557 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00109 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] - csv:101208620 895.575
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00772 Cma18g00109 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01034 Cma-Chr16:7944745 Cma18g00109 Cma-Chr18:534850 7.12E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g109 . . . . . . . . . Cmo18g00217 . . . . . . . . . . . . . . . . . . . . . Cone2ag0974 . . . Lsi02g00501 Csa01g00962 Chy12g01600 Cme12g01778 . . . Bda14g01363 . Bpe15g00218 . . . . . . Cma18g00109 . Car18g00100 Cpe09g01082 . . . . . . . . . . . . . . . . Csa01g00489 . .
Vvi17g882 . Blo16g00245 . . . . Bma06g00240 . Cmo13g00801 Cmo18g00086 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00459 Csa01g00915 Chy12g01209 Cme12g01631 . . Bda11g01628 . . . . . . . . Cma13g00772 Cma18g00109 Car13g00619 . . . . . . . . . . Cla03g00315 Cam03g0334 Cec03g0325 Cco03g0338 Clacu03g0335 Cmu03g0941 Cre03g0635 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007073 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 4 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00109 Cma_Chr18 FPKM 11.86159 12.152028 12.680408 13.489666 15.891293 16.387417 16.957563 20.159117 19.605473 18.365036