Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00110 ATGGCTTGGACGGAAAGGAGATGGGCCTCAGCGATATCAAAACAAGCTGTTTCTGCCATCGCCGCCGCCGCTGCTGCCATGCCGCCGAGACGATATGCCGTTGGACGGGCCGATGAGGCCACCCACCCCGACTCCGTTAGAGCCACCTTGGCTGAGTTCCTTTCCACTTTCATCTTCGTCTTTGCCGGAGAAGGCTCCGTCCTCGCTCTCGATAAAATTTTCAAGCCAGCAGACTATGGAAGCTACGGTCGGAGGGGAGGCGACACGGGCCGTACGGCGTCGGATTTAGTAGTAATAGCAATAGCGCATGCATTTGCGCTGTTCTCGGCCGTAGCGGCGAGTATCAACGTCTCCGGTGGGCATGTGAATCCTGCTGTTACATTTGGTGTACTTCTTGGAGGAAGGATATCTCTTATCCGTGCATTCTTCTATTGGGTAGCTCAGATTTTGGGCGCCATTGTGGCTTCCCTGATCTTGAGACTCGCAACGGGTGGCATGAGGCCAATGGGGTTCTTCGTTTCATCGGGCATATCAGAACTGCACGGGTTTCTACTAGAGATATTGCTTACATTTGCTTTGGTGTACGTAGTCTACGCAACAGCAGTAGACCCAAAGAGGGGAAGTTTAGAAACAATAGCACCACTGGCAATCGGGTTAATAGTCGGGGCGAATATTCTAGTGGGCGGGGTCTTTGATGGGGCCTGTATGAACCCGGCCCGGGCATTTGGGCCGTCCTTAGTGGGCTGGAGATGGGACAACCATTGGATCTACTGGATTGGGCCATTACTGGGAGGTGGGCTTGCTGCACTTGTCTATGAGTATTTGGTGATTCCAGTTGAACCTCCTGTACATGCCCCCCACCAGCCTTTAGCTCCGGAAGATTACTAA 888 53.27 MAWTERRWASAISKQAVSAIAAAAAAMPPRRYAVGRADEATHPDSVRATLAEFLSTFIFVFAGEGSVLALDKIFKPADYGSYGRRGGDTGRTASDLVVIAIAHAFALFSAVAASINVSGGHVNPAVTFGVLLGGRISLIRAFFYWVAQILGAIVASLILRLATGGMRPMGFFVSSGISELHGFLLEILLTFALVYVVYATAVDPKRGSLETIAPLAIGLIVGANILVGGVFDGACMNPARAFGPSLVGWRWDNHWIYWIGPLLGGGLAALVYEYLVIPVEPPVHAPHQPLAPEDY 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 540120 541974 + CmaCh18G001100.1 Cma18g00110 313448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00110 295 Gene3D Glycerol uptake facilitator protein. 30 281 IPR023271 -
Cma18g00110 295 PRINTS Major intrinsic protein family signature 218 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma18g00110 295 PRINTS Major intrinsic protein family signature 185 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma18g00110 295 PRINTS Major intrinsic protein family signature 255 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma18g00110 295 PRINTS Major intrinsic protein family signature 47 66 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma18g00110 295 PRINTS Major intrinsic protein family signature 103 127 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma18g00110 295 PRINTS Major intrinsic protein family signature 140 159 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma18g00110 295 SUPERFAMILY Aquaporin-like 39 283 IPR023271 -
Cma18g00110 295 Pfam Major intrinsic protein 40 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma18g00110 295 PANTHER - 28 295 - -
Cma18g00110 295 PANTHER AQUAPORIN-8 28 295 IPR034294 -
Cma18g00110 295 TIGRFAM MIP: MIP family channel proteins 51 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma18g00110 295 ProSitePatterns MIP family signature. 121 129 IPR022357 -
Cma18g00110 295 CDD MIP 47 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00234 Cma-Chr14:1032156 Cma18g00110 Cma-Chr18:540120 4.37E-87 dispersed
Cma15g01372 Cma-Chr15:8592592 Cma18g00110 Cma-Chr18:540120 2.17E-58 dispersed
Cma18g00110 Cma-Chr18:540120 Cma04g00163 Cma-Chr4:804572 3.36E-35 dispersed
Cma13g00950 Cma-Chr13:7449215 Cma18g00110 Cma-Chr18:540120 4.51E-175 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00110 K09873 - csv:101208863 471.855