Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00123 ATGTTTCGTATTTACTGTCGAGAATTCGATATTGCTATATTGTTCAGTAAGATTTTATGTTTGCAGAGCTTGACCGTTTCAGCAATGGGGAAGTCGCCGGGGAAATGGATTAAAACTATCTTGTTTGGGAAGAAGTCTTCCAAATCTAATCTTTCTAAGAACAGAGAGAAAAATGGAAATGAGAAGGAAGTATTGGTTTCTGTCAAGGCCTCAGAGGCTACTTCTGTTATTACGCATACTGCAGCTTCAGAACCAACCCTAAATACCATTGAGACGAACGAAGTGGTGTCAAAAATTACCCACAATGAGGCAGCTAATGCATCGTGTGAAAGATCGATATCAATTACAGGAAATCAAGATGCAGAAATTCAAGGTTCTACGTGCCAAGATACACCATCTGATTCTGAGAGAATCCGTAAAGAGGAGGCTGCAACTAAGGCTCAGGCTGCGTTTAGGGGTTATTTGGCTCGCCGAGCATTCCGGGCCCTCAAAGGTATTATTAGGTTGCAGGCGCTTATTCGTGGTCACTTAGTGAGGAGACAAGCTGTTGCTACTCTATGTTGTATGCTTGGAATTGTTAAGTTTCAGGCTATTGCTCGGGGAAGGAGAGTGAGGCTTTCTGATGTCGGTCTCGAAGTGCAAAACAAATATAGATTAGTGCAGCTACAGGAACAACTATTAGTGGCTCCTGCTGGAGTAAGTCTCTCGACACGTATGTCGAAGCTTTCAGCAAATGCTTTCACCATTAAGCTTGCTTCATCTACAACAGCCAAACCTCTGCAAATCTATTTTGATAATGAAGATGAAAATTCAGCCTTGAAATGGTTAGAGCGCTGGTCAAATTCTCGATTCTGGAAACCGATTCCCCCAGTAAAAAAGGCTGCAGAGTTTAAATCTCAAAGAAGGCTGAGAACTGGTCAAACGGGAGAGGGACATACCGTGAGGTCAAAACGCACGAGGAGAGTTCCCACTGTAAACAATGACAGTACTGTCCAATCATCTGCAGAAGTCGAGAAACCTAAACGTACATTTAGGAAAGCTTCAAGTCACTCAGCTGCAGAGCAGGCTCAGGAGAATCCTCAGATGGAGCTTGAAAAGGTCAAGCGCAGTCTAAGAAAGGTCCATAACCCCGTTCTCGAGAATCCTACCCCGATTGAAGCAGATGCGGAGAAGCCCAAGGAAAGTTCGGACAAGGTTTCTAATGGTCTAGGCCGTGACATTTTGGCCAGAGGTACTAATAATTCTTCTGAGAAAATGAAAAAAGAGGCTATCTCAACAATACCCGTCCAGCCTGATTTGGAAACAACTCCTGAGCCGATACCGATAAAAGAGGTACTTAATGTAACTAATGGTGATCCAGTTGTAGAATCACAGCCTTTGATTGAGGGCAATGATAAAGATAAGAGCATTGCTGGTAATGAGGCTGGTGTGGAGACTAAGCCTTTGACAGAGAGCTACCCTAAAGATGCCATCAACCAACTATTAACAAATGGGGAATCAAACCATAAGGAAGATACCGCTAACAACGAGAACCCGAAATCTGGTAGGAAAGGCTCTACTCCAGCCAAGCAAGAACGAGTGGAGAACGGGTTGCAACACAGTCCAACCATACCTAGCTACATGGTAGCAACTGAATCTGCAAAGGCAAAACTAAGAGCACAAGGATCTCCAAGATTCGAACAGGAGAGTGAAAGAAATAACAACAATCGACGACATTCTTTACCGTCATCCACCAATGCTAAACTCAGCTCACCGTCTCCACGAACACAAAGACTTGTTCAAGCAGGCGGTAAAGGCGGAAACAAAAATGACAAGGCACACATGGGATCCAGAGATGGAAATGGTAATCCAAGCAGACTGGAGAAGGTAAGCATTGGCTTTTCAGTGACTGGGACCATCTTCAAGTGGGGCTGCTGA 1917 44.18 MFRIYCREFDIAILFSKILCLQSLTVSAMGKSPGKWIKTILFGKKSSKSNLSKNREKNGNEKEVLVSVKASEATSVITHTAASEPTLNTIETNEVVSKITHNEAANASCERSISITGNQDAEIQGSTCQDTPSDSERIRKEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMLGIVKFQAIARGRRVRLSDVGLEVQNKYRLVQLQEQLLVAPAGVSLSTRMSKLSANAFTIKLASSTTAKPLQIYFDNEDENSALKWLERWSNSRFWKPIPPVKKAAEFKSQRRLRTGQTGEGHTVRSKRTRRVPTVNNDSTVQSSAEVEKPKRTFRKASSHSAAEQAQENPQMELEKVKRSLRKVHNPVLENPTPIEADAEKPKESSDKVSNGLGRDILARGTNNSSEKMKKEAISTIPVQPDLETTPEPIPIKEVLNVTNGDPVVESQPLIEGNDKDKSIAGNEAGVETKPLTESYPKDAINQLLTNGESNHKEDTANNENPKSGRKGSTPAKQERVENGLQHSPTIPSYMVATESAKAKLRAQGSPRFEQESERNNNNRRHSLPSSTNAKLSSPSPRTQRLVQAGGKGGNKNDKAHMGSRDGNGNPSRLEKVSIGFSVTGTIFKWGC 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 600823 604400 - CmaCh18G001230.1 Cma18g00123 313461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00123 638 Pfam IQ calmodulin-binding motif 164 181 IPR000048 GO:0005515
Cma18g00123 638 Pfam IQ calmodulin-binding motif 142 161 IPR000048 GO:0005515
Cma18g00123 638 PANTHER IQ-DOMAIN 5-RELATED 29 609 - -
Cma18g00123 638 MobiDBLite consensus disorder prediction 407 421 - -
Cma18g00123 638 Pfam Protein of unknown function (DUF4005) 520 602 IPR025064 -
Cma18g00123 638 SMART iq_5 139 161 IPR000048 GO:0005515
Cma18g00123 638 SMART iq_5 162 183 IPR000048 GO:0005515
Cma18g00123 638 ProSiteProfiles IQ motif profile. 164 186 IPR000048 GO:0005515
Cma18g00123 638 MobiDBLite consensus disorder prediction 323 337 - -
Cma18g00123 638 MobiDBLite consensus disorder prediction 525 541 - -
Cma18g00123 638 MobiDBLite consensus disorder prediction 454 621 - -
Cma18g00123 638 MobiDBLite consensus disorder prediction 386 400 - -
Cma18g00123 638 PANTHER PROTEIN IQ-DOMAIN 31 29 609 - -
Cma18g00123 638 ProSiteProfiles IQ motif profile. 140 168 IPR000048 GO:0005515
Cma18g00123 638 MobiDBLite consensus disorder prediction 361 375 - -
Cma18g00123 638 MobiDBLite consensus disorder prediction 298 438 - -
Cma18g00123 638 MobiDBLite consensus disorder prediction 570 591 - -
Cma18g00123 638 MobiDBLite consensus disorder prediction 555 569 - -
Cma18g00123 638 Gene3D - 138 187 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00123 - - - csv:101214198 912.138
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00933 Cma18g00123 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00123 Cma-Chr18:600823 Cma09g00343 Cma-Chr9:1410126 4.71E-22 dispersed
Cma13g00933 Cma-Chr13:7387045 Cma18g00123 Cma-Chr18:600823 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g521 Blo04g00761 Blo16g00193 . . . . . . Cmo13g00963 Cmo18g00095 . . . . . Cpe20g00197 . . . . . . . . . . . . . . . Cone2ag0858 Cone16ag0154 . . . Csa01g00786 . Cme12g01757 . . Bda11g01691 . . . . . Sed08g2583 . . Cma13g00933 Cma18g00123 Car13g00773 Car18g00113 Cpe09g01069 . Bhi08g01405 Tan05g2090 Cmetu12g0772 . . . . Cla01g01430 Cam01g1498 Cec01g1538 Cco01g1583 Clacu01g1521 Cmu01g1413 Cre01g1331 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008895 1 3 2 1 1 1 2 0 1 0 0 0 2 1 1 2 0 2 1 0 1 1 1 1 1 0 1 4 0 3 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00123 Cma_Chr18 FPKM 42.828381 43.943047 35.22295 35.006977 56.001446 58.834118 54.286751 31.390007 31.135784 29.711924