Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00125 ATGTTGAGGTTTTTCAAAGTGAAGCCTTTTAGTATTCACCTTATCATTTCCCATGCCTTTGGTAGCATAAAGAGGTGGCATGTGGATGACCGCAATCTGCGGGTAGCTGATTTTGCTCAGTTTTGGGCAATTGCAAAGAGTTCGGGCTATGAAGTTTACATTTTGGAAGCTACGTATAGGGACCCGACAGGCTGTGCAGCGAGGAATGTGCATGGATTTAATCTCGATGATATACAAAAGATGGCAAGACAATGGGAAGAAGCTCCGGCTTTGTACTTACAATTGGACATCAAGTCCTTGTGTCATGGGGATGACCTTAAAGAAAGTGGAATTAAGGAGGTGGACATGGATATGGAGGATGAAGATGATGATACTCCATCTAGTTTTCAAGAAACAAAGTCGATAAAGACAGCATTACATCCACAAAGAGACGATGCTTCTGAAGATGACGGGAAGAGATGGGACGAAGAATCGGACCATCGGAGAGAGGAAGTAAAAGAGTTGGGTAGGAGTAAATGGTCAAATGATTTAGATGATGATGATACTGAAAGAACAGATGGCGCGAATGGTCATGCAAATGCTCTTTCTGGCTTGATTCAAGCATATGCCAAGGAAGGAAAGTCCGTGCGCTGGATCGACCAGGCTGGTTATACCGGATTCTCGATTGGTGCTGCGAAAAAGGCAAACAGATTATCTTTAGTTATTGGTCCTGGTGCTGGATATAATCTGAAGTCCAACCCATTGCCAGAAGAATACCAATACCGTGGCTCAAACCAAAACAGCAATGAGTCGAAGAAACACAGCAGATTCGAGGAGCGATTGCGTGCTGAAAGCGAGTCATTTAAAGTCGTTTTCGATAAAAGGCGACAAAGGATAGGAGGACTAGATTGGGAAGAGGAGTAG 903 43.85 MLRFFKVKPFSIHLIISHAFGSIKRWHVDDRNLRVADFAQFWAIAKSSGYEVYILEATYRDPTGCAARNVHGFNLDDIQKMARQWEEAPALYLQLDIKSLCHGDDLKESGIKEVDMDMEDEDDDTPSSFQETKSIKTALHPQRDDASEDDGKRWDEESDHRREEVKELGRSKWSNDLDDDDTERTDGANGHANALSGLIQAYAKEGKSVRWIDQAGYTGFSIGAAKKANRLSLVIGPGAGYNLKSNPLPEEYQYRGSNQNSNESKKHSRFEERLRAESESFKVVFDKRRQRIGGLDWEEE 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 610631 614615 + CmaCh18G001250.1 Cma18g00125 313463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00125 300 PANTHER YLP MOTIF CONTAINING PROTEIN NUCLEAR PROTEIN ZAP 28 290 IPR026314 GO:0005634
Cma18g00125 300 MobiDBLite consensus disorder prediction 244 272 - -
Cma18g00125 300 MobiDBLite consensus disorder prediction 111 191 - -
Cma18g00125 300 MobiDBLite consensus disorder prediction 137 187 - -
Cma18g00125 300 Gene3D - 16 90 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00125 K17602 YLPM1; YLP motif-containing protein 1 - csv:101218580 471.085
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g513 Blo04g00760 . . . . . . . . Cmo18g00096 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00309 Csa01g00789 Chy12g01327 Cme12g01754 . . . Bda14g00840 . Bpe15g00612 Bma03g00817 . Sed08g2575 . . . Cma18g00125 . Car18g00114 Cpe09g01068 . Bhi08g01412 Tan05g2085 Cmetu12g1842 Lac10g0369 Hepe07g2285 . . Cla01g01427 Cam01g1494 Cec01g1534 Cco01g1580 Clacu01g1518 Cmu01g1410 Cre01g1328 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005368 1 1 1 7 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00125 Cma_Chr18 FPKM 23.34477 26.82509 25.75279 28.541319 32.325577 37.241486 29.094709 32.556507 34.790546 32.069218