Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00126 ATGAGAGAGCTAGAAAGCAACATTGTTGGGGCTAAGCTGCTGCTGCTGATATTTGCTTTTGCTATCATTTTTCCAACCCTTGAGGCTGATATTGCAGATTTTGATGAAGTATGGCAGCAAAGAGCTCAAGAAGCCAAGAAGGCTGCCTTGGAGGCCTACCAACCCCATCCTGAAGAGGTCACTGAGAATTTCAATGAGCATGTTAACGGAGACTTAGATGATGCAAATAACACAAGGAGACATTTGAGGAAATACAATGGTCCATGTTTAGCTACAAATCCAATTGATAGATGCTGGAGATGTGACAAAAACTGGGCTAAAAACCGTAAGAAGCTAGCTGATTGTGCGCTCGGGTTCGGCCGAGGAACAACAGGAGGCAAAAATGGAAGATTTTACGTCGTTCAAGATTCGAGCGATAACGACATGCTTCATCCTAAACCCGGAACTCTCCGCTATGCCGTGATCCAAGACAGACCACTTTGGATTACATTTGCACATGACATGGTGATCAGGCTAGCTGAAGAGCTTATAATGACTGATAACAAGACATTAGATGGACGTGGTGCCAATGTCCATATAGCTAATGGTGGTCAAATTACTTTGCAATTTGTGAAGAACATAATCATCCATAATTTGCATATTCATGACATCAAAGCTGGCAATGGAGGCCTTATTCGAGACTCGGTGAACCATTACGGGATTCGAACGCGGAGCGATGGAGACGGGATCTCCATTTTTGGAGCTTCGAATGTTTGGATAGATCATGTTTCGATGTCTAATTGTCAAGACGGACTGATCGATGCAGTCATGGCGTCGACTGCCATTACCATTTCCAACTGCCATTTCGCTCACCATAACGATGTGATATTATTAGGGGCAAGTGATAGCCACTCGGATGACCAGATTATGCAGGTAACGCTTGCATTTAATCACTTTGGTAAAGGGTTGGTGCAGAGGATGCCTAGATGCCGATGGGGGTTCGTCCATGTGGTCAATAATGACTACACTCATTGGCTTATGTATGCCATCGGTGGCAGCCGCAACCCCACCATTATCAGCCAGGGGAACCGTTTCATTGCCCCACCAGACCCAAATTGCAAAGAGGTGACGAAAAGGGTATATGCACCAGAAAGCGATTGGAAAACATGGAATTGGAGATCAGAAGGAGATCTGCTGATGAATGGAGCTTTCTTCGTGGAATCTGGGAACCCCATAAGAAAATACTCAAAGAAAGATGTGATCCATGCAAAACCAGGAACATTTGTCACAAGGCTTACACGGTTCGCAGGGCCTCTAAAATGCACAAGGAACCAACCCTGTTAA 1323 44.97 MRELESNIVGAKLLLLIFAFAIIFPTLEADIADFDEVWQQRAQEAKKAALEAYQPHPEEVTENFNEHVNGDLDDANNTRRHLRKYNGPCLATNPIDRCWRCDKNWAKNRKKLADCALGFGRGTTGGKNGRFYVVQDSSDNDMLHPKPGTLRYAVIQDRPLWITFAHDMVIRLAEELIMTDNKTLDGRGANVHIANGGQITLQFVKNIIIHNLHIHDIKAGNGGLIRDSVNHYGIRTRSDGDGISIFGASNVWIDHVSMSNCQDGLIDAVMASTAITISNCHFAHHNDVILLGASDSHSDDQIMQVTLAFNHFGKGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSRNPTIISQGNRFIAPPDPNCKEVTKRVYAPESDWKTWNWRSEGDLLMNGAFFVESGNPIRKYSKKDVIHAKPGTFVTRLTRFAGPLKCTRNQPC 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 615357 619017 - CmaCh18G001260.1 Cma18g00126 313464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00126 440 SUPERFAMILY Pectin lyase-like 83 434 IPR011050 -
Cma18g00126 440 Pfam Pectate lyase, N terminus 31 82 IPR007524 GO:0030570
Cma18g00126 440 PANTHER PECTATE LYASE 18-RELATED 11 440 IPR045032 GO:0030570
Cma18g00126 440 Gene3D - 92 433 IPR012334 -
Cma18g00126 440 PANTHER PECTATE LYASE 11 440 - -
Cma18g00126 440 Pfam Pectate lyase 178 358 IPR002022 -
Cma18g00126 440 PRINTS Pollen allergen Amb family signature 115 132 IPR018082 -
Cma18g00126 440 PRINTS Pollen allergen Amb family signature 139 164 IPR018082 -
Cma18g00126 440 PRINTS Pollen allergen Amb family signature 175 191 IPR018082 -
Cma18g00126 440 PRINTS Pollen allergen Amb family signature 239 260 IPR018082 -
Cma18g00126 440 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Cma18g00126 440 PRINTS Pollen allergen Amb family signature 341 360 IPR018082 -
Cma18g00126 440 PRINTS Pollen allergen Amb family signature 383 407 IPR018082 -
Cma18g00126 440 SMART amb_all 167 364 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01041 Cma-Chr11:5702559 Cma18g00126 Cma-Chr18:615357 0 dispersed
Cma18g00126 Cma-Chr18:615357 Cma08g01035 Cma-Chr8:6481057 3.02E-168 dispersed
Cma14g00604 Cma-Chr14:3003631 Cma18g00126 Cma-Chr18:615357 0 wgd
Cma18g00126 Cma-Chr18:615357 Cma04g01634 Cma-Chr4:8245667 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00126 K01728 - csv:101218812 783.097