Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00128 ATGGCGGTTCGGAGGGTCTATGGCGGCGGCGACGACGGTGGTAGTATAAGTGGTGTTTCTTCCAACCATACTGTTTTTCCTCAGAATCGTAAAGGGTCCTCTGTTTCTGAGCCTCTTAATGCTCTGTTCGTTTCTGGGTCGTCTTCTTCGACTTCCCCCTCTATGCTTGGTTCAAAATCTACGGTAAGTTTCAAAGATATCCATGGACGAAACGGATCAACTAGACCGTTCTTTTACTCGTTCGATACCGAAGATAAAGGAAACGAAGACTTGGATGATTATTTCCATCACCCTGAAAAGAAGAGGCGTTTAACTTCCGATCAAGTCCGATTCCTAGAGAAAAGTTTCGAGATCGATAACAAGCTCGAACCAGAAAGGAAAGTTCAATTAGCAAAGGACCTTGAGCTGCAGCCTCGTCAAGTTGCTATATGGTTTCAGAATCGTCGAGCTCGGTGGAAAACGAAGCAGCTCGAGAAGGATTACGAGGCTCTTCAATCCAGCTATGGAAGCCTCAAGGTTGAGTATGAAAAGCTACTCAAGGAGAAGGATTCACTAAAAGCTAAGATTCTTGTCCTAACAGACAAGCTGCTACTCAAAGCAAAAGAAAAGGGTAGCTCTGTGGTGTCTGAAGTAGACAAATCTAGTGACATATTTGATTCAGATAGCCCACTCGTAGAGCCTCGAGATTCTTCGTATATTTTCGATCCCGATCAGTCCGACTTATCACAAGACGAAGACGATAACACGGGAAAGAATCTATTGCCTACTTACGTCTTCCCAAAGCTCGAAGATGTCAATTACTCGGACCCGCCTGCAAGTGCTTGTAGTTTTGTATTCCCCATTGATGAAGACGGTGCTCTTTGGTCCTGGTCTTAG 876 44.86 MAVRRVYGGGDDGGSISGVSSNHTVFPQNRKGSSVSEPLNALFVSGSSSSTSPSMLGSKSTVSFKDIHGRNGSTRPFFYSFDTEDKGNEDLDDYFHHPEKKRRLTSDQVRFLEKSFEIDNKLEPERKVQLAKDLELQPRQVAIWFQNRRARWKTKQLEKDYEALQSSYGSLKVEYEKLLKEKDSLKAKILVLTDKLLLKAKEKGSSVVSEVDKSSDIFDSDSPLVEPRDSSYIFDPDQSDLSQDEDDNTGKNLLPTYVFPKLEDVNYSDPPASACSFVFPIDEDGALWSWS 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 627359 629878 + CmaCh18G001280.1 Cma18g00128 313466

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00128 291 Pfam Homeodomain 100 153 IPR001356 GO:0003677
Cma18g00128 291 CDD homeodomain 100 156 IPR001356 GO:0003677
Cma18g00128 291 SMART HOX_1 98 159 IPR001356 GO:0003677
Cma18g00128 291 ProSiteProfiles 'Homeobox' domain profile. 95 155 IPR001356 GO:0003677
Cma18g00128 291 Coils Coil 161 195 - -
Cma18g00128 291 MobiDBLite consensus disorder prediction 229 249 - -
Cma18g00128 291 SUPERFAMILY Homeodomain-like 87 157 IPR009057 -
Cma18g00128 291 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 34 289 IPR045224 GO:0003700
Cma18g00128 291 MobiDBLite consensus disorder prediction 15 34 - -
Cma18g00128 291 ProSitePatterns 'Homeobox' domain signature. 130 153 IPR017970 GO:0000981|GO:0006355
Cma18g00128 291 Pfam Homeobox associated leucine zipper 155 196 IPR003106 GO:0006355|GO:0043565
Cma18g00128 291 Gene3D - 95 162 - -
Cma18g00128 291 MobiDBLite consensus disorder prediction 1 34 - -
Cma18g00128 291 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 34 289 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00128 - - - cmax:111490298 541.962
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00928 Cma18g00128 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00644 Cma-Chr14:3207688 Cma18g00128 Cma-Chr18:627359 5.90E-42 dispersed
Cma15g00329 Cma-Chr15:1521359 Cma18g00128 Cma-Chr18:627359 1.55E-40 dispersed
Cma13g00928 Cma-Chr13:7361934 Cma18g00128 Cma-Chr18:627359 1.19E-141 wgd
Cma15g00281 Cma-Chr15:1338846 Cma18g00128 Cma-Chr18:627359 3.12E-36 wgd
Cma18g00128 Cma-Chr18:627359 Cma04g01628 Cma-Chr4:8204265 3.75E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g499 Blo04g00758 Blo16g00197 . . . Bpe13g00275 . . Cmo13g00956 Cmo18g00098 . . . . . Cpe20g00203 . . . . . . . . . . . . . . . . Cone16ag0147 . Cone19ag0090 Lsi02g00316 Csa01g00793 Chy12g01323 Cme12g01748 . . . Bda14g00838 . Bpe15g00614 Bma03g00813 . . . . Cma13g00928 Cma18g00128 Car13g00767 Car18g00118 Cpe09g01065 . Bhi08g01418 Tan05g2080 . Lac10g0375 . . . Cla01g01422 Cam01g1489 Cec04g1119 Cco01g1575 Clacu01g1513 Cmu01g1405 Cre01g1323 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003231 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36739 PF00046 Homeodomain 1.30E-16 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00128 Cma_Chr18 FPKM 0.625166 0.829751 32.071663 32.680489 138.562836 128.165436 141.386063 39.951981 43.325714 43.39645