Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00130 ATGGGGGACAAGCCGGAAGTGTTGGAAGCTGTGTTGAAGGAAGCTGTGGATTTGGAAAATATTCCCATTGATGAGGTTTTTGAAAACCTGAGATGTAGCAAAGAGGGTCTTACAAGTGAGGCTGCTGAGGAACGTTTGAAGATTTTTGGGCACAACAAGCTTGAGGAAAAGAAGGAGAGCAAAGTGTTGAAGTTCTTGGGGTTCATGTGGAATCCTCTATCATGGGTTATGGAAGCTGCTGCTATTATGGCTATTGCACTTGCAAATGGAGGAGGAAAGCCCCCTGACTGGCAAGATTTTGTTGGTATCATTACCTTGCTTATCATCAACTCGACGATTAGTTTTATCGAGGAAAACAATGCTGGAAACGCTGCAGCTGCGCTCATGGCTCGTCTTGCTCCTAAAGCTAAGTCTGCTCTTACAGGTGAATCTCTCCCTGTAACGAAAGGTCCTGGTGATGGTGTTTACTCTGGTTCTACTTGTAAGCAAGGAGAGATTGAAGCTGTGGAAGTTCCTGAAGGAAGGAAAGAGAGTGCTGGAGGTCCTTGGCAATTCATGGGCCTCTTGCCTTTGTTTGACCCACCAAGGCATGATAGTGCAGAGACAATAAGGAGAGCTTTAAATCTAGGCGTAAATGTGAAAATGATTACAGGAGATCAACTCGCTATAGGCAAGGAGACGGGGCGTCGGTTGGGGATGGGAACGAACATGTATCCATCGTCAGCTCTACTAGGACAAGAAAAAGACGAGTCCATTGCTGCTTTACCTGTCGATGATCTTATCGAAAAAGCAGATGGTTTTGCTGGTGTATTCCCTGAGCACAAATACGAGATTGTAAAACGCTTGCAAGCTATGAAACATATATGTGGGATGACTGGCGACGGAGTGAATGATGCTCCTGCACTTAAAAAAGCTGACATCGGTATAGCTGTAGCGGATGCAACCGATGCTGCTCGAAGCGCTTCCGATATTGTTCTTACAGAACCTGGTCTCAGTGTTATCATCAGCGCTGTTTTAACCAGTCGAGCTATATTTCAAAGGATGAAGAATTACACGATTTATGCAGTTTCCATCACAATACGTATCGTGCTTGGTTTCATGTTGCTGGCCCTCATTTGGAAATTCGATTTCCCACCATTTATGGTGCTTATCATAGCTATCCTTAACGATGCTCATGATGACTTCAGGAAGCTAGCCTCAGCTATATATCTGCAAGTGAGCACTATCAGTCAGGCACTCATTTTTGTTACTCGATCACGGAGTTGGTCCTACGTCGAGCGTCCTGGGCTGTTTCTTGTCGTGGCATTTATAATTGCTCAGCTGGTTGCTACTCTTATTGCTGTGTATGCTAATTGGAGCTTTGCTGCCATTGAAGGAATTGGTTGGGGTTGGGCTGGTGTCATTTGGCTCTATAACATTATCTTTTATGTTCCTCTTGATCCTATAAAGTTTGCTATCAGATATGCTTTGAGTGGAAAGGCTTGGGATCTCATGCTTGAGCAAAGGGTTGCTTTCACAAGACAAAAGGATTTCGGTAAGGAACAACTAAATATTGCATACCCGACAAATGAAATTGACCTTCCAATGCTTCTCGTGTTGTATGTCAACCTGAGAAATGGACGTGGAAGCTTAAGAAATGCCCATGAAAAAGAATCAAGTTTAATAATGGCGTCTTCCTCCTCCCATTCCCCGTTTACCACTTCCCCAAGCTTCCTTCCTACTCCAACCTTTACCCTTTTTATCATCACAATGAAACCCTACTCTTCATTCTTGTCTAACTCAGCAGCGGCCTCCTCAATGTGCAAGGAAATTCAAATGGGCATGTTCGTTTTGGCTTTCTCATCCATTTTGCTATCGACCCTTTTCGGTTCTTGCACTCTCGCTCTTACCCCAGATGCGTTGTTGGAAATTAGAAGCGCTTTTAATGATAGCAAAAACCTCCTTGGTGATTGGGAAGCTTCTGATGAGTCGCCCTGCAAATGGACTGGTATATCTTGTCACCTTGAGGACCAACGGGTCAGCTCAATTAACTTACCTTACATGCAACTAGGAGGGATTATTTCTCCTAGCATTGATCTCTGTGGTCATCAAGTTAACAAGGCCTGCCAAACCTCGTTGGGATTCCCTGCAGTGTTGCCCCATGCTGAAAGCGATGAAGCTTCAGTGCCTGTGAAAAGACCTTCACACTACATCAAAGGAGTATTAATTGGTGCAGTGTCCACCATGGGAGTTGCATTTGTAGTACTCGTTCCATTCTTGTGGATTCGTTGGCTATCGAAGAAGGAACGAGCTGCGAAACGATACACAGAAGTCAAAAAACAAGTGGTTCACGAACCAAACACAAAACTTATTACTTTTCATGGCGACCTACCGTACCCGTCATGCGAGATCATCGAAAAGCTGGAGTCACTAGAGGAAGAAGACGTTGTTGGTTCAGGAGGATTCGGGATCGTGTACCGAATGGTCATGAACGATTGTGGGACATTTGCTGTTAAAAAGATTGATGGAAGCAGAAAAGGTTCTGACCAAGTGTTTGAGAGAGAGTTGGAGATTCTGGGTTGCATCAAACATATAAACTTGGTCAATTTGAGGGGTTATTGTAGTCTTCCAACTTCAAAGCTTCTTATCTATGACTTCCTTGCAATGGGCAGCTTAGATGATTTTCTGCATGAACAGGAATCAGAAAGACAACCTTTGGATTGGCGAGCTCGTTTAAAGGTAGCATTGGGCTCTGCTAGGGGGATTGCATATTTGCATCATGATTGTAGTCCAAAGATCGTGCATCGTGACATTAAATCGAGCAACATTCTTCTTGACGAGAACTTGGAGCCTCATGTATCTGACTTTGGACTAGCCAAGCTTTTGGTTGATGAGGATTCTCATGTCACAACTGTTGTTGCTGGAACATTTGGTTATTTGGCTCCAGAGTATCTACAAAGTGGGAGGGCGACCGAAAAATCCGATGTTTATAGCTTTGGAGTTTTGTTACTCGAGCTGGTGACTGGGAAGAGACCAACTGATCCATCATTTGTAAAGAGAGGCTTGAATGTTGTTGGTTGGACTGCTAATGTATGCACAGACATGTTAGAACATGATGATTCATTACAGATGCACACATTATTGGGAGAAAACAAAATGGATGAGATAGTCGACAAAAGGTGCAAGGAGGTCGATGCCGATACAGTCGAAGCAATCCTTGAAATAGCAGCCAAATGCACGGATGCCGACCCAGACAATCGGCCATCGATGAGTCAAGTTTTGCAGTTTCTAGAGCAAGAAGTCATGTCACCATGTCCTAGTGATTTCTATGAGTCTCATTCTGATTATTCTTGA 3333 43.98 MGDKPEVLEAVLKEAVDLENIPIDEVFENLRCSKEGLTSEAAEERLKIFGHNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLIINSTISFIEENNAGNAAAALMARLAPKAKSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVEVPEGRKESAGGPWQFMGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQEKDESIAALPVDDLIEKADGFAGVFPEHKYEIVKRLQAMKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSYVERPGLFLVVAFIIAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYVPLDPIKFAIRYALSGKAWDLMLEQRVAFTRQKDFGKEQLNIAYPTNEIDLPMLLVLYVNLRNGRGSLRNAHEKESSLIMASSSSHSPFTTSPSFLPTPTFTLFIITMKPYSSFLSNSAAASSMCKEIQMGMFVLAFSSILLSTLFGSCTLALTPDALLEIRSAFNDSKNLLGDWEASDESPCKWTGISCHLEDQRVSSINLPYMQLGGIISPSIDLCGHQVNKACQTSLGFPAVLPHAESDEASVPVKRPSHYIKGVLIGAVSTMGVAFVVLVPFLWIRWLSKKERAAKRYTEVKKQVVHEPNTKLITFHGDLPYPSCEIIEKLESLEEEDVVGSGGFGIVYRMVMNDCGTFAVKKIDGSRKGSDQVFERELEILGCIKHINLVNLRGYCSLPTSKLLIYDFLAMGSLDDFLHEQESERQPLDWRARLKVALGSARGIAYLHHDCSPKIVHRDIKSSNILLDENLEPHVSDFGLAKLLVDEDSHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFVKRGLNVVGWTANVCTDMLEHDDSLQMHTLLGENKMDEIVDKRCKEVDADTVEAILEIAAKCTDADPDNRPSMSQVLQFLEQEVMSPCPSDFYESHSDYS 1110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 635192 651524 - CmaCh18G001300.1 Cma18g00130 313468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00130 1110 Gene3D - 172 192 IPR023299 GO:0000166
Cma18g00130 1110 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Cma18g00130 1110 Gene3D - 330 391 - -
Cma18g00130 1110 Gene3D - 392 489 - -
Cma18g00130 1110 Gene3D - 68 139 - -
Cma18g00130 1110 PRINTS H+-transporting ATPase (proton pump) signature 292 308 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma18g00130 1110 PRINTS H+-transporting ATPase (proton pump) signature 264 280 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma18g00130 1110 PRINTS H+-transporting ATPase (proton pump) signature 323 348 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma18g00130 1110 Pfam Leucine rich repeat N-terminal domain 632 666 IPR013210 -
Cma18g00130 1110 SUPERFAMILY Protein kinase-like (PK-like) 785 1091 IPR011009 -
Cma18g00130 1110 ProSiteProfiles Protein kinase domain profile. 804 1095 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00130 1110 Gene3D - 193 329 IPR023214 -
Cma18g00130 1110 Gene3D Phosphorylase Kinase; domain 1 763 879 - -
Cma18g00130 1110 PANTHER PLASMA MEMBRANE ATPASE 1 3 137 - -
Cma18g00130 1110 PANTHER PLASMA MEMBRANE ATPASE 1 137 169 - -
Cma18g00130 1110 PANTHER PLASMA MEMBRANE ATPASE 1 170 391 - -
Cma18g00130 1110 PANTHER PLASMA MEMBRANE ATPASE 1 392 520 - -
Cma18g00130 1110 ProSitePatterns Protein kinases ATP-binding region signature. 810 833 IPR017441 GO:0005524
Cma18g00130 1110 Gene3D Ribonuclease Inhibitor 631 697 IPR032675 -
Cma18g00130 1110 Pfam Protein kinase domain 805 1088 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00130 1110 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 267 380 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma18g00130 1110 Gene3D Transferase(Phosphotransferase) domain 1 880 1099 - -
Cma18g00130 1110 Pfam E1-E2 ATPase 137 171 - -
Cma18g00130 1110 Gene3D - 140 169 - -
Cma18g00130 1110 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 490 IPR023298 -
Cma18g00130 1110 SMART serkin_6 804 1095 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00130 1110 PANTHER CALCIUM-TRANSPORTING ATPASE 3 137 - -
Cma18g00130 1110 PANTHER CALCIUM-TRANSPORTING ATPASE 137 169 - -
Cma18g00130 1110 PANTHER CALCIUM-TRANSPORTING ATPASE 392 520 - -
Cma18g00130 1110 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Cma18g00130 1110 SUPERFAMILY HAD-like 184 338 IPR036412 -
Cma18g00130 1110 ProSitePatterns Serine/Threonine protein kinases active-site signature. 926 938 IPR008271 GO:0004672|GO:0006468
Cma18g00130 1110 PANTHER CALCIUM-TRANSPORTING ATPASE 170 391 - -
Cma18g00130 1110 Pfam haloacid dehalogenase-like hydrolase 187 306 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00165 Cma18g00130 CCT
Cma10g00179 Cma18g00130 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00179 Cma-Chr10:821374 Cma18g00130 Cma-Chr18:635192 1.04E-29 dispersed
Cma11g00165 Cma-Chr11:851940 Cma18g00130 Cma-Chr18:635192 2.48E-29 dispersed
Cma18g00130 Cma-Chr18:635192 Cma01g00171 Cma-Chr1:759278 3.44E-57 dispersed
Cma10g00176 Cma-Chr10:803743 Cma18g00130 Cma-Chr18:635192 2.26E-86 wgd
Cma13g00925 Cma-Chr13:7347211 Cma18g00130 Cma-Chr18:635192 0 wgd
Cma18g00130 Cma-Chr18:635192 Cma04g02750 Cma-Chr4:18498092 3.81E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69266 PF00069 Pkinase 5.30E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00130 - - cmax:111490257 798.89