Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma18g00130 | ATGGGGGACAAGCCGGAAGTGTTGGAAGCTGTGTTGAAGGAAGCTGTGGATTTGGAAAATATTCCCATTGATGAGGTTTTTGAAAACCTGAGATGTAGCAAAGAGGGTCTTACAAGTGAGGCTGCTGAGGAACGTTTGAAGATTTTTGGGCACAACAAGCTTGAGGAAAAGAAGGAGAGCAAAGTGTTGAAGTTCTTGGGGTTCATGTGGAATCCTCTATCATGGGTTATGGAAGCTGCTGCTATTATGGCTATTGCACTTGCAAATGGAGGAGGAAAGCCCCCTGACTGGCAAGATTTTGTTGGTATCATTACCTTGCTTATCATCAACTCGACGATTAGTTTTATCGAGGAAAACAATGCTGGAAACGCTGCAGCTGCGCTCATGGCTCGTCTTGCTCCTAAAGCTAAGTCTGCTCTTACAGGTGAATCTCTCCCTGTAACGAAAGGTCCTGGTGATGGTGTTTACTCTGGTTCTACTTGTAAGCAAGGAGAGATTGAAGCTGTGGAAGTTCCTGAAGGAAGGAAAGAGAGTGCTGGAGGTCCTTGGCAATTCATGGGCCTCTTGCCTTTGTTTGACCCACCAAGGCATGATAGTGCAGAGACAATAAGGAGAGCTTTAAATCTAGGCGTAAATGTGAAAATGATTACAGGAGATCAACTCGCTATAGGCAAGGAGACGGGGCGTCGGTTGGGGATGGGAACGAACATGTATCCATCGTCAGCTCTACTAGGACAAGAAAAAGACGAGTCCATTGCTGCTTTACCTGTCGATGATCTTATCGAAAAAGCAGATGGTTTTGCTGGTGTATTCCCTGAGCACAAATACGAGATTGTAAAACGCTTGCAAGCTATGAAACATATATGTGGGATGACTGGCGACGGAGTGAATGATGCTCCTGCACTTAAAAAAGCTGACATCGGTATAGCTGTAGCGGATGCAACCGATGCTGCTCGAAGCGCTTCCGATATTGTTCTTACAGAACCTGGTCTCAGTGTTATCATCAGCGCTGTTTTAACCAGTCGAGCTATATTTCAAAGGATGAAGAATTACACGATTTATGCAGTTTCCATCACAATACGTATCGTGCTTGGTTTCATGTTGCTGGCCCTCATTTGGAAATTCGATTTCCCACCATTTATGGTGCTTATCATAGCTATCCTTAACGATGCTCATGATGACTTCAGGAAGCTAGCCTCAGCTATATATCTGCAAGTGAGCACTATCAGTCAGGCACTCATTTTTGTTACTCGATCACGGAGTTGGTCCTACGTCGAGCGTCCTGGGCTGTTTCTTGTCGTGGCATTTATAATTGCTCAGCTGGTTGCTACTCTTATTGCTGTGTATGCTAATTGGAGCTTTGCTGCCATTGAAGGAATTGGTTGGGGTTGGGCTGGTGTCATTTGGCTCTATAACATTATCTTTTATGTTCCTCTTGATCCTATAAAGTTTGCTATCAGATATGCTTTGAGTGGAAAGGCTTGGGATCTCATGCTTGAGCAAAGGGTTGCTTTCACAAGACAAAAGGATTTCGGTAAGGAACAACTAAATATTGCATACCCGACAAATGAAATTGACCTTCCAATGCTTCTCGTGTTGTATGTCAACCTGAGAAATGGACGTGGAAGCTTAAGAAATGCCCATGAAAAAGAATCAAGTTTAATAATGGCGTCTTCCTCCTCCCATTCCCCGTTTACCACTTCCCCAAGCTTCCTTCCTACTCCAACCTTTACCCTTTTTATCATCACAATGAAACCCTACTCTTCATTCTTGTCTAACTCAGCAGCGGCCTCCTCAATGTGCAAGGAAATTCAAATGGGCATGTTCGTTTTGGCTTTCTCATCCATTTTGCTATCGACCCTTTTCGGTTCTTGCACTCTCGCTCTTACCCCAGATGCGTTGTTGGAAATTAGAAGCGCTTTTAATGATAGCAAAAACCTCCTTGGTGATTGGGAAGCTTCTGATGAGTCGCCCTGCAAATGGACTGGTATATCTTGTCACCTTGAGGACCAACGGGTCAGCTCAATTAACTTACCTTACATGCAACTAGGAGGGATTATTTCTCCTAGCATTGATCTCTGTGGTCATCAAGTTAACAAGGCCTGCCAAACCTCGTTGGGATTCCCTGCAGTGTTGCCCCATGCTGAAAGCGATGAAGCTTCAGTGCCTGTGAAAAGACCTTCACACTACATCAAAGGAGTATTAATTGGTGCAGTGTCCACCATGGGAGTTGCATTTGTAGTACTCGTTCCATTCTTGTGGATTCGTTGGCTATCGAAGAAGGAACGAGCTGCGAAACGATACACAGAAGTCAAAAAACAAGTGGTTCACGAACCAAACACAAAACTTATTACTTTTCATGGCGACCTACCGTACCCGTCATGCGAGATCATCGAAAAGCTGGAGTCACTAGAGGAAGAAGACGTTGTTGGTTCAGGAGGATTCGGGATCGTGTACCGAATGGTCATGAACGATTGTGGGACATTTGCTGTTAAAAAGATTGATGGAAGCAGAAAAGGTTCTGACCAAGTGTTTGAGAGAGAGTTGGAGATTCTGGGTTGCATCAAACATATAAACTTGGTCAATTTGAGGGGTTATTGTAGTCTTCCAACTTCAAAGCTTCTTATCTATGACTTCCTTGCAATGGGCAGCTTAGATGATTTTCTGCATGAACAGGAATCAGAAAGACAACCTTTGGATTGGCGAGCTCGTTTAAAGGTAGCATTGGGCTCTGCTAGGGGGATTGCATATTTGCATCATGATTGTAGTCCAAAGATCGTGCATCGTGACATTAAATCGAGCAACATTCTTCTTGACGAGAACTTGGAGCCTCATGTATCTGACTTTGGACTAGCCAAGCTTTTGGTTGATGAGGATTCTCATGTCACAACTGTTGTTGCTGGAACATTTGGTTATTTGGCTCCAGAGTATCTACAAAGTGGGAGGGCGACCGAAAAATCCGATGTTTATAGCTTTGGAGTTTTGTTACTCGAGCTGGTGACTGGGAAGAGACCAACTGATCCATCATTTGTAAAGAGAGGCTTGAATGTTGTTGGTTGGACTGCTAATGTATGCACAGACATGTTAGAACATGATGATTCATTACAGATGCACACATTATTGGGAGAAAACAAAATGGATGAGATAGTCGACAAAAGGTGCAAGGAGGTCGATGCCGATACAGTCGAAGCAATCCTTGAAATAGCAGCCAAATGCACGGATGCCGACCCAGACAATCGGCCATCGATGAGTCAAGTTTTGCAGTTTCTAGAGCAAGAAGTCATGTCACCATGTCCTAGTGATTTCTATGAGTCTCATTCTGATTATTCTTGA | 3333 | 43.98 | MGDKPEVLEAVLKEAVDLENIPIDEVFENLRCSKEGLTSEAAEERLKIFGHNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLIINSTISFIEENNAGNAAAALMARLAPKAKSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVEVPEGRKESAGGPWQFMGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQEKDESIAALPVDDLIEKADGFAGVFPEHKYEIVKRLQAMKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSYVERPGLFLVVAFIIAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYVPLDPIKFAIRYALSGKAWDLMLEQRVAFTRQKDFGKEQLNIAYPTNEIDLPMLLVLYVNLRNGRGSLRNAHEKESSLIMASSSSHSPFTTSPSFLPTPTFTLFIITMKPYSSFLSNSAAASSMCKEIQMGMFVLAFSSILLSTLFGSCTLALTPDALLEIRSAFNDSKNLLGDWEASDESPCKWTGISCHLEDQRVSSINLPYMQLGGIISPSIDLCGHQVNKACQTSLGFPAVLPHAESDEASVPVKRPSHYIKGVLIGAVSTMGVAFVVLVPFLWIRWLSKKERAAKRYTEVKKQVVHEPNTKLITFHGDLPYPSCEIIEKLESLEEEDVVGSGGFGIVYRMVMNDCGTFAVKKIDGSRKGSDQVFERELEILGCIKHINLVNLRGYCSLPTSKLLIYDFLAMGSLDDFLHEQESERQPLDWRARLKVALGSARGIAYLHHDCSPKIVHRDIKSSNILLDENLEPHVSDFGLAKLLVDEDSHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFVKRGLNVVGWTANVCTDMLEHDDSLQMHTLLGENKMDEIVDKRCKEVDADTVEAILEIAAKCTDADPDNRPSMSQVLQFLEQEVMSPCPSDFYESHSDYS | 1110 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 635192 | 651524 | - | CmaCh18G001300.1 | Cma18g00130 | 313468 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma18g00130 | 1110 | Gene3D | - | 172 | 192 | IPR023299 | GO:0000166 | |
Cma18g00130 | 1110 | Pfam | Cation transporter/ATPase, N-terminus | 20 | 83 | IPR004014 | - | |
Cma18g00130 | 1110 | Gene3D | - | 330 | 391 | - | - | |
Cma18g00130 | 1110 | Gene3D | - | 392 | 489 | - | - | |
Cma18g00130 | 1110 | Gene3D | - | 68 | 139 | - | - | |
Cma18g00130 | 1110 | PRINTS | H+-transporting ATPase (proton pump) signature | 292 | 308 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma18g00130 | 1110 | PRINTS | H+-transporting ATPase (proton pump) signature | 264 | 280 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma18g00130 | 1110 | PRINTS | H+-transporting ATPase (proton pump) signature | 323 | 348 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma18g00130 | 1110 | Pfam | Leucine rich repeat N-terminal domain | 632 | 666 | IPR013210 | - | |
Cma18g00130 | 1110 | SUPERFAMILY | Protein kinase-like (PK-like) | 785 | 1091 | IPR011009 | - | |
Cma18g00130 | 1110 | ProSiteProfiles | Protein kinase domain profile. | 804 | 1095 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma18g00130 | 1110 | Gene3D | - | 193 | 329 | IPR023214 | - | |
Cma18g00130 | 1110 | Gene3D | Phosphorylase Kinase; domain 1 | 763 | 879 | - | - | |
Cma18g00130 | 1110 | PANTHER | PLASMA MEMBRANE ATPASE 1 | 3 | 137 | - | - | |
Cma18g00130 | 1110 | PANTHER | PLASMA MEMBRANE ATPASE 1 | 137 | 169 | - | - | |
Cma18g00130 | 1110 | PANTHER | PLASMA MEMBRANE ATPASE 1 | 170 | 391 | - | - | |
Cma18g00130 | 1110 | PANTHER | PLASMA MEMBRANE ATPASE 1 | 392 | 520 | - | - | |
Cma18g00130 | 1110 | ProSitePatterns | Protein kinases ATP-binding region signature. | 810 | 833 | IPR017441 | GO:0005524 | |
Cma18g00130 | 1110 | Gene3D | Ribonuclease Inhibitor | 631 | 697 | IPR032675 | - | |
Cma18g00130 | 1110 | Pfam | Protein kinase domain | 805 | 1088 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma18g00130 | 1110 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 267 | 380 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma18g00130 | 1110 | Gene3D | Transferase(Phosphotransferase) domain 1 | 880 | 1099 | - | - | |
Cma18g00130 | 1110 | Pfam | E1-E2 ATPase | 137 | 171 | - | - | |
Cma18g00130 | 1110 | Gene3D | - | 140 | 169 | - | - | |
Cma18g00130 | 1110 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 17 | 490 | IPR023298 | - | |
Cma18g00130 | 1110 | SMART | serkin_6 | 804 | 1095 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma18g00130 | 1110 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 3 | 137 | - | - | |
Cma18g00130 | 1110 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 137 | 169 | - | - | |
Cma18g00130 | 1110 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 392 | 520 | - | - | |
Cma18g00130 | 1110 | SMART | Cation_ATPase_N_a_2 | 17 | 89 | IPR004014 | - | |
Cma18g00130 | 1110 | SUPERFAMILY | HAD-like | 184 | 338 | IPR036412 | - | |
Cma18g00130 | 1110 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 926 | 938 | IPR008271 | GO:0004672|GO:0006468 | |
Cma18g00130 | 1110 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 170 | 391 | - | - | |
Cma18g00130 | 1110 | Pfam | haloacid dehalogenase-like hydrolase | 187 | 306 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g00165 | Cma18g00130 | CCT | |
Cma10g00179 | Cma18g00130 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma10g00179 | Cma-Chr10:821374 | Cma18g00130 | Cma-Chr18:635192 | 1.04E-29 | dispersed | |
Cma11g00165 | Cma-Chr11:851940 | Cma18g00130 | Cma-Chr18:635192 | 2.48E-29 | dispersed | |
Cma18g00130 | Cma-Chr18:635192 | Cma01g00171 | Cma-Chr1:759278 | 3.44E-57 | dispersed | |
Cma10g00176 | Cma-Chr10:803743 | Cma18g00130 | Cma-Chr18:635192 | 2.26E-86 | wgd | |
Cma13g00925 | Cma-Chr13:7347211 | Cma18g00130 | Cma-Chr18:635192 | 0 | wgd | |
Cma18g00130 | Cma-Chr18:635192 | Cma04g02750 | Cma-Chr4:18498092 | 3.81E-68 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
69266 | PF00069 | Pkinase | 5.30E-46 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma18g00130 | - | - | cmax:111490257 | 798.89 |