Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00134 ATGCAAGTAAAGTCAACGAAACAGGAAACATGTCGAGATCTTGAAGGGGATCCAAAGGGGTTTGTAATGTATCATTTCTTGACACAGACAGTGCGTTTTGAAGATGGGATTAAACAAAGTCTAAGGGGATGGACTGAAGAACATCTCTTTCCCTCTCTCTCTCTAGCTCTCTCTGTTCTTCATCTATTTGGGGCTATGGGGCGTTTCATTGGGTTCATCCTCTTCCTCTGTGGGCTTCTGCTGCTTGTTCATCCTACAGTTTCACTTCCCTTGTGCTCTGATTCAACGGCGCCCTCTACTTTGAACTCTACATTGGAGTTTTGTCCTTATAAGGGGAGTGTTTGCTGCAACTCTACACAAGATGGAGATATACAGAGACAATTCCAAGGGATGAACATTTCTGATCCTGCCTGTTCTTCCCTTGTTAAATCCATTGTCTGTGCGAGGTGTGATCCATTTTCGGGAGATCTATATATAGTCAATTCCACGCCTAGATCAGTTCCTCTTCTTTGCAACTCAACTTCAGAAAATTCACCACAATCCAACCAAGCAGCCACTGACTTCTGCTCTACAGTATGGGATACATGCCAAAATATCACCATTGTCAACTCCCCCTTTGCCCCTTCTTTACAGGGTCGAGCGGGAGTACCGACTAACTCGAGTACTAGCAAGCTCTCGGATCTCTGGCTGTCGAAAACCGACTTTTGCAATGCATTTGGAGGATCATCCACTGAAGAATCAGTCTGCTTTGTTGGTGAACCTGTTTCCCTTAACAATACCAAACTTCCTAGCCCTCCAGATGGCCTATGTCTTGAGAAAATTGGAAATGGATCTTACCTGAACATGGTGGCTCATCCTGATGGATCTAATCGTGCATTCTTCTCTAACCAAGCAGGCAAGGTTTGGTTAGCCACTATTCCCGAGATGGGGTCAGGAGGAATGTTGGAGCTTGACGAATCAAAACCGTTCGTAGATTTAACCGATGTAGTTAACTTAGATACTCAATTTGGCATGATGGGGCTTGCATTTCATCCAAATTTTGCACAAAATGGAAGGTTTTTTGCTTCTTTCAATTGTGACAAAGTTAAGTGGCCAGGGTGTTCTGGAAGATGTTCTTGTAATTCTGACGTTAATTGTGATCCTTCTAAACTACCATCTGATAGCGGATCCCAACCATGTCAGCATCAAAGTGTTGTTGCAGAGTACACTGTAAACGGCAGTGCATCCCAGCCTTCATTGGCAACAACTGCAAAACCAACAGAAGTGAGAAGAATAATCACAATTGGTCTTCCTTTTACCTCTCGTCATGCAGGACAGATACTCTTTGGGGAAGATGGTTACCTTTACTTCATGATGGGCGATGGCGGCGGTCAAGGTGGTGATCCTTACAACTTTTCCCAGAACAAGAAGTCGTTGCTTGGAAAGATTATGAGGCTTGATATCAATAACATTCCAAGTTCAGAAGACATTAATAAACTTGATCTATGGGGAAACTATTCTATTCCTAAAGACAACCCATTTGTTGAAGATCAAAGTGCACTGCCAGAGATATGGGCTTACGGATTGAGAAATCCCTGGCGCTGCAGTTTCGATTCAGAAAGACCTTCCTACTTCATGTGTGGAGATGTTGGGCAGGATCGATTCGAAGAGGTGAACATCATCTCAAAGGGTGGAAACTATGGCTGGAGTGTTTATGAGGGTCCTCTTTTGTTTGTTCCAAATTCATCCCCTAAAGAATCCACACCTATAGATTCCATAAATCCAATCTTTCCTGTGATGGGCTACAACCATTCTACCATAAACAAGAACACAGGTTCAGCATCGATAACGGGGGGTTATTTCTATCGGTCTAACACTGATCCGTGTTTGTACGGAAGGTACTTGTATGCAGATTTGTATGCTTCTGCTATTTGGGCAGGAACCGAAACCCCAAAGAACAGTGGGAACTTTACCACAAATGATATTCCTTTCAGTTGTGCTCCTGATTCTCCCATACCTTGTAGTTCCACTCCAGGAAGCCCTCTTCCAGCTTTGGGCTATGTCTTTTCATTTGGTGAGGACAATGACAAGGACATTTACGTTCTAACTAGCAGCGGTGTCTACAGGTTCGTCCCGCCAAGTCGTTGTAAATACACTTGCTCGTTGGAAAACGTAACAACAACAGTTGGAAGCTTGAGTCCAACGCCGTCACCTCCGTCTCATGCTAGTCGGTCAACGAACTCATGGAGCAGCCTGGTGCTCCTACTGCTGCTGCTTTTCACTTGTAGCTGA 2271 44.25 MQVKSTKQETCRDLEGDPKGFVMYHFLTQTVRFEDGIKQSLRGWTEEHLFPSLSLALSVLHLFGAMGRFIGFILFLCGLLLLVHPTVSLPLCSDSTAPSTLNSTLEFCPYKGSVCCNSTQDGDIQRQFQGMNISDPACSSLVKSIVCARCDPFSGDLYIVNSTPRSVPLLCNSTSENSPQSNQAATDFCSTVWDTCQNITIVNSPFAPSLQGRAGVPTNSSTSKLSDLWLSKTDFCNAFGGSSTEESVCFVGEPVSLNNTKLPSPPDGLCLEKIGNGSYLNMVAHPDGSNRAFFSNQAGKVWLATIPEMGSGGMLELDESKPFVDLTDVVNLDTQFGMMGLAFHPNFAQNGRFFASFNCDKVKWPGCSGRCSCNSDVNCDPSKLPSDSGSQPCQHQSVVAEYTVNGSASQPSLATTAKPTEVRRIITIGLPFTSRHAGQILFGEDGYLYFMMGDGGGQGGDPYNFSQNKKSLLGKIMRLDINNIPSSEDINKLDLWGNYSIPKDNPFVEDQSALPEIWAYGLRNPWRCSFDSERPSYFMCGDVGQDRFEEVNIISKGGNYGWSVYEGPLLFVPNSSPKESTPIDSINPIFPVMGYNHSTINKNTGSASITGGYFYRSNTDPCLYGRYLYADLYASAIWAGTETPKNSGNFTTNDIPFSCAPDSPIPCSSTPGSPLPALGYVFSFGEDNDKDIYVLTSSGVYRFVPPSRCKYTCSLENVTTTVGSLSPTPSPPSHASRSTNSWSSLVLLLLLLFTCS 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 677629 682805 + CmaCh18G001340.1 Cma18g00134 313472

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00134 756 Gene3D - 275 700 IPR011042 -
Cma18g00134 756 Pfam Glucose / Sorbosone dehydrogenase 321 637 IPR012938 -
Cma18g00134 756 PANTHER HIPL1 PROTEIN-LIKE 72 751 - -
Cma18g00134 756 PANTHER HEDGEHOG-INTERACTING PROTEIN 72 751 - -
Cma18g00134 756 SUPERFAMILY Soluble quinoprotein glucose dehydrogenase 268 633 IPR011041 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00134 - - - csv:101216524 1267.68
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00921 Cma18g00134 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00921 Cma-Chr13:7320795 Cma18g00134 Cma-Chr18:677629 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g479 . . . . . Bpe13g00269 Bma06g00190 . Cmo13g00945 Cmo18g00105 . . . . . Cpe20g00036 . . . . . . . . . . . . . . . Cone2ag0871 Cone16ag0139 . . Lsi02g00328 Csa01g00802 Chy12g01314 Cme12g01738 . . Bda11g01682 Bda14g00833 . Bpe15g00618 Bma03g00807 . Sed08g2562 . . Cma13g00921 Cma18g00134 Car13g00759 Car18g00126 Cpe09g01058 . Bhi08g01429 Tan05g2068 . Lac10g0392 . . . Cla01g01414 Cam01g1480 Cec01g1519 Cco01g1565 Clacu01g1503 Cmu01g1396 Cre01g1316 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003165 2 3 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 5 3 2 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00134 Cma_Chr18 FPKM 30.129866 35.348213 11.954204 13.17106 13.693627 15.791732 15.085275 2.608414 2.218693 2.057874