Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00135 ATGGATTTCACTTCTACAAGGTCGAAGAAGAATGGAACCTCGAATTCCAACGACTCTGACGGCCGCGACAGCAGAGCGATAGTCAGAAGGAGGCCGCCGACGATAGAGCTTTTGGCATCTACAAGCTCTACACTCGCGACGATCATGTTCACGTGGACGATCATCCGCCAGTACTGCCCTCACGACCTCCGCCAATATCTCCATAGATATTTAAACAAGTTCATCGATTACATCTATCCTAATCCGTACGTTCGAATCGCAATCTACGAATTCGTTGGCGAACGCCTCAATCGAAGCAAAGCCTTCGCAGCGGTTGAATCTTATCTGAGCACTAAACTTTCGGATGATGCGAAAAGACTCAAAGCCGAGGTCGGGGATAACAAGAACAATTTCTCACTGAATATAGACGAGTACGAAAGAATTACCGATGAATATGAAAACGCCGAATTCTGGTGGACTTTGAGCAAAATCTCTGGATCGGCAAAGAAATCTACCTCTCTGTATCCAGAGCCCGATCGGAGATACTACCAACTTAAATTTCACAAGAAGCATCGAAACCTTGTAACTGAATCGTATTTGAAGCATGTACTGAAGGAAGGGAGAGAAATCAAAGTGAATCGAAGGCAGAGGAAGCTGTACACTAATGGAACTGGAAATCGATTGACGATTCACCGGCAATCGACGATGTGGAGCGAAGTGTACTTCGAGCATCCTGCTAACTTTGATACAATCGCCATGGATCCAGAGAAGAAGCACGAGATTGTGGAAGATTTACTCACATTTAGGGAAAGCAAAGATTATTACGCTCGAATCGGCAAAGCTTGGAAACGAGGCTACCTTCTGTACGGCCCGCCAGGGACGGGGAAATCGACGATGATAGCCGCCATGGCAAATTTGCTCAACTATGACGTTTACGATTTGGAATTAACTGCGGTGAAGGACAATACAGAGCTTCGGAAGCTTCTAATTGAAACGACGAGTAAATCGATAATCGTTATCGAAGACATCGATTGTTCACTGGAACTCACAGGGCAGAGGAAAATCAAGAAGGAAGAAAGCTCGAAAGATGAGGAGAAAGTGAAAGAGAAAGAGAAGTTAATTAAGGAACATTTGAAGAAAGAAGAAGAAGAGGTGAAAAGCAGAGTGACTCTGTCTGGATTGCTGAATTTCATCGACGGAATTTGGTCGGCGTGCGGCGGAGAGAGGCTGATCGTTTTCACCACAAATCACGTGGAGAAGCTCGATCCAGCGTTGATTCGAAGTGGACGAATGGACAAACACATTGAGCTCTCTTACTGCACCTTTGAAGCCTTCAAAGTACTGTCTAAGAACTACTTGAATATCGAAACACATGAGCTTTTTGAGGAGATTCAAGAGCTTATCAAAGAAGCAAAAATCACGCCGGCGGATGTTGCAGAGAATCTCATGCCGAAGTCCCGGCAAGAAGCCGCTGAGAATTCGCTTCGTAGGTTGATTCGTAGCCTGGAAGAGCTGAAGCGCGCGGCGGAGATTGAGTCAACGAAGGAAGAGAAACGGGCAGAAAAATCAAAAGAGTCCAAAATCAATAGCTGTTCTTGA 1578 45.44 MDFTSTRSKKNGTSNSNDSDGRDSRAIVRRRPPTIELLASTSSTLATIMFTWTIIRQYCPHDLRQYLHRYLNKFIDYIYPNPYVRIAIYEFVGERLNRSKAFAAVESYLSTKLSDDAKRLKAEVGDNKNNFSLNIDEYERITDEYENAEFWWTLSKISGSAKKSTSLYPEPDRRYYQLKFHKKHRNLVTESYLKHVLKEGREIKVNRRQRKLYTNGTGNRLTIHRQSTMWSEVYFEHPANFDTIAMDPEKKHEIVEDLLTFRESKDYYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLELTGQRKIKKEESSKDEEKVKEKEKLIKEHLKKEEEEVKSRVTLSGLLNFIDGIWSACGGERLIVFTTNHVEKLDPALIRSGRMDKHIELSYCTFEAFKVLSKNYLNIETHELFEEIQELIKEAKITPADVAENLMPKSRQEAAENSLRRLIRSLEELKRAAEIESTKEEKRAEKSKESKINSCS 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 683637 685214 - CmaCh18G001350.1 Cma18g00135 313473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00135 525 PANTHER BCS1 AAA-TYPE ATPASE 36 520 - -
Cma18g00135 525 MobiDBLite consensus disorder prediction 504 519 - -
Cma18g00135 525 PANTHER ATP BINDING PROTEIN 36 520 - -
Cma18g00135 525 CDD AAA 276 432 - -
Cma18g00135 525 SMART AAA_5 275 434 IPR003593 -
Cma18g00135 525 Pfam ATPase family associated with various cellular activities (AAA) 280 431 IPR003959 GO:0005524|GO:0016887
Cma18g00135 525 MobiDBLite consensus disorder prediction 504 525 - -
Cma18g00135 525 Gene3D - 429 498 - -
Cma18g00135 525 Coils Coil 357 377 - -
Cma18g00135 525 MobiDBLite consensus disorder prediction 1 26 - -
Cma18g00135 525 Coils Coil 128 148 - -
Cma18g00135 525 MobiDBLite consensus disorder prediction 1 21 - -
Cma18g00135 525 Gene3D - 231 428 IPR027417 -
Cma18g00135 525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 484 IPR027417 -
Cma18g00135 525 Pfam Domain associated at C-terminal with AAA 60 155 IPR025753 -
Cma18g00135 525 ProSitePatterns AAA-protein family signature. 402 420 IPR003960 GO:0005524|GO:0016887
Cma18g00135 525 Coils Coil 481 512 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00135 - - - cmo:103483085 756.133
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00919 Cma18g00135 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00468 Cma-Chr7:2042379 Cma18g00135 Cma-Chr18:683637 3.77E-40 dispersed
Cma13g00919 Cma-Chr13:7318669 Cma18g00135 Cma-Chr18:683637 0 wgd
Cma14g00612 Cma-Chr14:3031012 Cma18g00135 Cma-Chr18:683637 0 wgd
Cma15g00290 Cma-Chr15:1370417 Cma18g00135 Cma-Chr18:683637 8.98E-176 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g477 . . . . . . . . Cmo13g00944 . . . . . . Cpe20g00212 . . . . . . . . . . . . . . . . . . . Lsi02g00331 Csa01g00805 Chy12g01312 Cme12g01737 . . . . . . . . Sed08g2559 . . Cma13g00919 Cma18g00135 Car13g00758 Car18g00127 Cpe09g01057 . Bhi08g01431 Tan05g2065 Cmetu12g1057 Lac10g0394 Hepe07g2269 . . Cla01g01413 Cam01g1479 Cec01g1518 Cco01g1564 Clacu01g1502 Cmu01g1395 Cre01g1315 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013815 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 2 1 2 1 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00135 Cma_Chr18 FPKM 34.488594 36.951698 0.506817 0.905779 6.495128 6.639664 6.384812 24.966673 26.197138 23.1647