Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00141 ATGACGACCGACGTTCCTGATTCCGCCGTCTCCGGCGGCGTTACCAAGGAAATTGTGTTGTTCGGAGTTAGAGTCGTGGTGGACCCGATGAGGAAGAGCGTCAGTATGAACAATCTCTCTCAGTATCAGCATCCTCCTGCGGTTTCCAATGATGATAACGGCGGTAATAGTAAGGGTAATATCTCCGCCGCTGAGAGGAAGGAAGATTCGACTGCTGGTTATGCTTCTGCGGACGATGCCGTGCCCAATTCCGGTGGGAATCGTGAACGCAAGCGAGGAGTACCATGGACGGAGGAAGAGCACAAACTTTTCTTGCTGGGATTGCAGAAAGTGGGGAAAGGGGATTGGAGAGGAATTTCAAGAAATTTCGTTAAAACTCGAACCCCCACGCAGGTGGCTAGCCACGCGCAAAAATACTTTCTACGCCGAAGCAACCTAAATCGTCGCCGCCGTAGATCCAGCCTCTTTGATATCACCACGGATACGGTAAAGGTGGCTGCTGAAGAACACCAAATTCAACTTCAAGATAATTCCTCCAAATTGCAATCCTTGTTGCCACCTCCACCACCTGAAACTTGCAACATAAATGGATATCATCATCCGATGCCAACTTTTCCTCTATCTGTTTGCCCTGCAGTTTTACCTGTGCCAAATCCAATCGAAAATCCCACACTTGGGCAAGAAAACCTTGACCTTGCTGCTGAAATTTTGCCACTCAATCCAACCACACCCAAGATTAACTCGAATTTGAAGTCGGCATTAAAATCTGGAGCTCTTTCTCTTAACCTTTCTTTGCCTTCAAACTCTGCCAATTCTTCATCAAAACACCCTGATTTCCCAGGAATCTCAAGAATGAGCAGCGGGGATAACATTATCAGTGTTTCTTAA 888 47.18 MTTDVPDSAVSGGVTKEIVLFGVRVVVDPMRKSVSMNNLSQYQHPPAVSNDDNGGNSKGNISAAERKEDSTAGYASADDAVPNSGGNRERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVKVAAEEHQIQLQDNSSKLQSLLPPPPPETCNINGYHHPMPTFPLSVCPAVLPVPNPIENPTLGQENLDLAAEILPLNPTTPKINSNLKSALKSGALSLNLSLPSNSANSSSKHPDFPGISRMSSGDNIISVS 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 708562 711284 - CmaCh18G001410.1 Cma18g00141 313479

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00141 295 MobiDBLite consensus disorder prediction 266 295 - -
Cma18g00141 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 144 IPR017930 -
Cma18g00141 295 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 15 295 - -
Cma18g00141 295 Pfam Myb-like DNA-binding domain 95 140 IPR001005 -
Cma18g00141 295 PANTHER KIN2 15 295 - -
Cma18g00141 295 CDD SANT 95 140 IPR001005 -
Cma18g00141 295 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 91 142 IPR006447 GO:0003677
Cma18g00141 295 ProSiteProfiles SANT domain profile. 91 144 IPR017884 -
Cma18g00141 295 MobiDBLite consensus disorder prediction 37 60 - -
Cma18g00141 295 SUPERFAMILY Homeodomain-like 90 145 IPR009057 -
Cma18g00141 295 Gene3D - 94 146 - -
Cma18g00141 295 MobiDBLite consensus disorder prediction 37 94 - -
Cma18g00141 295 ProSiteProfiles Myb-like domain profile. 88 140 IPR001005 -
Cma18g00141 295 SMART sant 92 142 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00141 - - - mcha:111008940 394.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00180 Cma-Chr11:935372 Cma18g00141 Cma-Chr18:708562 1.11E-69 dispersed
Cma18g00141 Cma-Chr18:708562 Cma06g00797 Cma-Chr6:4182489 2.48E-50 dispersed
Cma10g00160 Cma-Chr10:725322 Cma18g00141 Cma-Chr18:708562 2.70E-78 wgd
Cma13g00914 Cma-Chr13:7306049 Cma18g00141 Cma-Chr18:708562 1.50E-121 wgd
Cma18g00141 Cma-Chr18:708562 Cma04g01608 Cma-Chr4:8119664 8.74E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g416 . . . . . . . . . Cmo18g00110 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma18g00141 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013347 0 1 0 0 0 1 1 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 0 26
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36740 PF00249 Myb_DNA-binding 2.50E-11 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00141 Cma_Chr18 FPKM 35.896431 41.239674 45.764999 48.248859 44.432674 36.492386 45.663685 12.686368 12.788284 15.052136