Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00144 ATGGAGATCTGCGGCGGAGGCGGAGACGGTGACGGTGACACTGACGACTTCATGGCGGCTCTGCCATCCTCTTCTGCGTTACCGGATTCTTCGTCTTCCAGACACCATACTTACAGTAGGAAGCAGAAATCCCTCGGTCTTTTGTGCTCAAATTTTTTGAGCTTGTATAACCACGATGAAGTTCACTCGATTGGGCTTGATGATGCTGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTCTTGGAGAGCGTCGGGGTTCTCTCCAGAAAGGCGAAAAATCAGTATAGTTGGAATGGGTTTGGGGCAATTCCTAAGGCCTTGCAAGATCTTAAGGAGGAAGGGTTGAAGGATAATTGCAGCGCATCTGATGGCACCGATTATGCAAAAGTCTCAGATGATGAAGATGACGATGAAAGACTTTCCAATCCAACCGGAAGCCAAAACTCAACTGCCACCATGCCCAAATCTTCATCATCTTTAAAAGCCGACAATAGGAGGGAAAAATCATTGGCGCTTCTGACTCAAAATTTTGTTAAGCTATTTATTTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCGAGGCTCTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACAAAAGTGAGGCGGCTATATGACATTGCAAATGTTCTGTCTTCTATGAATCTAATTGAGAAGACGCATACAACTGACACGAGAAAGCCAGCGTTTAGGTGGTTGGGAGTAAGGGGTAAAGTTAAGAATGAGCCAATTGTTCTTCCAGAGTCGAAAAAAAGGGCATTTGGAACGGATGTAACAAATGTCAGTTATAAGAAAACCAAGACTGAAAATTCAGCCTATCCGAGTTTAAATCATTGCCTCAACATGCAAAAGCCAGTGCCGTGTGAGAATTCTTCGCAAGAGGACAGCCAGAACAGTCAGGATCAGGAATGTGAACGAACTTCCAAGAGCTATCAATTTGGACCATTTGCTCCTGTAACAGTAGCTAAAGTTGGTGTCTTAGACAATAACAACGTGAAGCGAACTCACGATTGGGAAAGCCTTTCCTCGACATTCCGCCCTCAGTATCACAACCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCTATACAAATATCTTGA 1194 43.8 MEICGGGGDGDGDTDDFMAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDEVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKDNCSASDGTDYAKVSDDEDDDERLSNPTGSQNSTATMPKSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAARLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPIVLPESKKRAFGTDVTNVSYKKTKTENSAYPSLNHCLNMQKPVPCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVLDNNNVKRTHDWESLSSTFRPQYHNQALKELFSHYVEAWKSWYSEAVKKPIQIS 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 726434 731612 + CmaCh18G001440.1 Cma18g00144 313482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00144 397 MobiDBLite consensus disorder prediction 148 165 - -
Cma18g00144 397 SUPERFAMILY Winged helix DNA-binding domain 39 103 IPR036390 -
Cma18g00144 397 SMART E2F_TDP_2 40 105 IPR003316 GO:0005667|GO:0006355
Cma18g00144 397 SMART E2F_TDP_2 171 251 IPR003316 GO:0005667|GO:0006355
Cma18g00144 397 PANTHER TRANSCRIPTION FACTOR E2F 23 389 IPR015633 GO:0000978|GO:0006357
Cma18g00144 397 MobiDBLite consensus disorder prediction 1 36 - -
Cma18g00144 397 Pfam E2F/DP family winged-helix DNA-binding domain 41 105 IPR003316 GO:0005667|GO:0006355
Cma18g00144 397 Pfam E2F/DP family winged-helix DNA-binding domain 173 251 IPR003316 GO:0005667|GO:0006355
Cma18g00144 397 MobiDBLite consensus disorder prediction 123 168 - -
Cma18g00144 397 Gene3D - 35 108 IPR036388 -
Cma18g00144 397 Gene3D - 166 253 IPR036388 -
Cma18g00144 397 SUPERFAMILY Winged helix DNA-binding domain 173 252 IPR036390 -
Cma18g00144 397 MobiDBLite consensus disorder prediction 301 324 - -
Cma18g00144 397 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 23 389 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00144 K09391 E2F7_8; transcription factor E2F7/8 - csv:101219210 706.827
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00152 Cma18g00144 CCT
Cma13g00908 Cma18g00144 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00144 Cma-Chr18:726434 Cma20g00153 Cma-Chr20:751925 2.18E-11 dispersed
Cma10g00152 Cma-Chr10:697829 Cma18g00144 Cma-Chr18:726434 1.46E-08 wgd
Cma13g00908 Cma-Chr13:7271261 Cma18g00144 Cma-Chr18:726434 4.17E-173 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g681 Blo04g00746 Blo16g00207 . . . Bpe13g00264 Bma06g00196 . Cmo13g00935 Cmo18g00114 Cma10g00152 . Car10g00143 . Sed08g0171 Cpe20g00223 . Bhi02g00386 Tan09g2196 Cmetu02g0961 . Hepe09g0165 . . Cla06g01632 Cam06g1815 Cec06g1865 Cco06g1871 Clacu06g1773 Cmu06g1715 Cre06g2535 . Cone16ag0131 . . Lsi02g00346 Csa01g00818 Chy12g01298 Cme12g01723 . . . Bda14g00825 . . Bma03g00799 . Sed08g2543 Cmo10g00164 . Cma13g00908 Cma18g00144 Car13g00748 Car18g00138 Cpe09g01047 Cpe18g00824 Bhi08g01449 Tan05g2045 . . . . . Cla01g01399 Cam01g1461 Cec01g1502 . Clacu01g1485 Cmu01g1380 Cre01g1296 Lsi06g01514 Csa01g00185 Chy02g02548 Cme02g01934
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma18g00144 CCT,CST 17 392 E2F-DP Transcription Factor Family AT3G48160 55.1 7.9e-104 374.8
Cma16g00244 . 81 284 E2F-DP Transcription Factor Family AT5G02470 54.6 9.6e-59 224.6
Cma04g00385 . 541 751 E2F-DP Transcription Factor Family AT5G02470 52.8 1.8e-57 220.3
Cma20g00153 CST 21 441 E2F-DP Transcription Factor Family AT2G36010 55.8 5.9e-122 435.3
Cma03g01126 . 11 421 E2F-DP Transcription Factor Family AT2G36010 53.1 1.0e-110 397.9
Cma02g01309 CST 21 257 E2F-DP Transcription Factor Family AT2G36010 54.5 2.9e-60 230.3
Cma20g00153 CST 10 463 E2F-DP Transcription Factor Family AT5G22220 56.0 8.8e-115 411.4
Cma03g01126 . 50 446 E2F-DP Transcription Factor Family AT5G22220 50.8 2.6e-90 330.1
Cma02g01309 CST 24 257 E2F-DP Transcription Factor Family AT5G22220 60.6 3.3e-61 233.4
Cma05g00301 CST 155 410 E2F-DP Transcription Factor Family AT1G47870 53.7 6.4e-66 248.8
Cma12g00412 CST 153 408 E2F-DP Transcription Factor Family AT1G47870 53.1 3.2e-65 246.5
Cma20g00153 CST 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 5.1e-63 239.2
Cma16g00244 . 81 284 E2F-DP Transcription Factor Family AT5G02470 54.6 9.6e-59 224.6
Cma04g00385 . 541 751 E2F-DP Transcription Factor Family AT5G02470 52.8 1.8e-57 220.3
Cma20g00153 CST 10 463 E2F-DP Transcription Factor Family AT5G22220 56.0 8.8e-115 411.4
Cma03g01126 . 50 446 E2F-DP Transcription Factor Family AT5G22220 50.8 2.6e-90 330.1
Cma02g01309 CST 24 257 E2F-DP Transcription Factor Family AT5G22220 60.6 3.3e-61 233.4
Cma20g00153 CST 21 441 E2F-DP Transcription Factor Family AT2G36010 55.8 5.9e-122 435.3
Cma03g01126 . 11 421 E2F-DP Transcription Factor Family AT2G36010 53.1 1.0e-110 397.9
Cma02g01309 CST 21 257 E2F-DP Transcription Factor Family AT2G36010 54.5 2.9e-60 230.3
Cma05g00301 CST 155 410 E2F-DP Transcription Factor Family AT1G47870 53.7 6.4e-66 248.8
Cma12g00412 CST 153 408 E2F-DP Transcription Factor Family AT1G47870 53.1 3.2e-65 246.5
Cma20g00153 CST 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 5.1e-63 239.2
Cma18g00144 CCT,CST 17 392 E2F-DP Transcription Factor Family AT3G48160 55.1 7.9e-104 374.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36741 PF02319 E2F_TDP 5.50E-20 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00144 Cma_Chr18 FPKM 11.369693 10.868531 11.399002 10.529319 22.938816 23.97835 24.252256 10.635438 11.85243 11.14603