Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00144 ATGGAGATCTGCGGCGGAGGCGGAGACGGTGACGGTGACACTGACGACTTCATGGCGGCTCTGCCATCCTCTTCTGCGTTACCGGATTCTTCGTCTTCCAGACACCATACTTACAGTAGGAAGCAGAAATCCCTCGGTCTTTTGTGCTCAAATTTTTTGAGCTTGTATAACCACGATGAAGTTCACTCGATTGGGCTTGATGATGCTGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTCTTGGAGAGCGTCGGGGTTCTCTCCAGAAAGGCGAAAAATCAGTATAGTTGGAATGGGTTTGGGGCAATTCCTAAGGCCTTGCAAGATCTTAAGGAGGAAGGGTTGAAGGATAATTGCAGCGCATCTGATGGCACCGATTATGCAAAAGTCTCAGATGATGAAGATGACGATGAAAGACTTTCCAATCCAACCGGAAGCCAAAACTCAACTGCCACCATGCCCAAATCTTCATCATCTTTAAAAGCCGACAATAGGAGGGAAAAATCATTGGCGCTTCTGACTCAAAATTTTGTTAAGCTATTTATTTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCGAGGCTCTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACAAAAGTGAGGCGGCTATATGACATTGCAAATGTTCTGTCTTCTATGAATCTAATTGAGAAGACGCATACAACTGACACGAGAAAGCCAGCGTTTAGGTGGTTGGGAGTAAGGGGTAAAGTTAAGAATGAGCCAATTGTTCTTCCAGAGTCGAAAAAAAGGGCATTTGGAACGGATGTAACAAATGTCAGTTATAAGAAAACCAAGACTGAAAATTCAGCCTATCCGAGTTTAAATCATTGCCTCAACATGCAAAAGCCAGTGCCGTGTGAGAATTCTTCGCAAGAGGACAGCCAGAACAGTCAGGATCAGGAATGTGAACGAACTTCCAAGAGCTATCAATTTGGACCATTTGCTCCTGTAACAGTAGCTAAAGTTGGTGTCTTAGACAATAACAACGTGAAGCGAACTCACGATTGGGAAAGCCTTTCCTCGACATTCCGCCCTCAGTATCACAACCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCTATACAAATATCTTGA 1194 43.8 MEICGGGGDGDGDTDDFMAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDEVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKDNCSASDGTDYAKVSDDEDDDERLSNPTGSQNSTATMPKSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAARLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPIVLPESKKRAFGTDVTNVSYKKTKTENSAYPSLNHCLNMQKPVPCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVLDNNNVKRTHDWESLSSTFRPQYHNQALKELFSHYVEAWKSWYSEAVKKPIQIS 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 726434 731612 + CmaCh18G001440.1 Cma18g00144 313482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00144 397 MobiDBLite consensus disorder prediction 148 165 - -
Cma18g00144 397 SUPERFAMILY Winged helix DNA-binding domain 39 103 IPR036390 -
Cma18g00144 397 SMART E2F_TDP_2 40 105 IPR003316 GO:0005667|GO:0006355
Cma18g00144 397 SMART E2F_TDP_2 171 251 IPR003316 GO:0005667|GO:0006355
Cma18g00144 397 PANTHER TRANSCRIPTION FACTOR E2F 23 389 IPR015633 GO:0000978|GO:0006357
Cma18g00144 397 MobiDBLite consensus disorder prediction 1 36 - -
Cma18g00144 397 Pfam E2F/DP family winged-helix DNA-binding domain 41 105 IPR003316 GO:0005667|GO:0006355
Cma18g00144 397 Pfam E2F/DP family winged-helix DNA-binding domain 173 251 IPR003316 GO:0005667|GO:0006355
Cma18g00144 397 MobiDBLite consensus disorder prediction 123 168 - -
Cma18g00144 397 Gene3D - 35 108 IPR036388 -
Cma18g00144 397 Gene3D - 166 253 IPR036388 -
Cma18g00144 397 SUPERFAMILY Winged helix DNA-binding domain 173 252 IPR036390 -
Cma18g00144 397 MobiDBLite consensus disorder prediction 301 324 - -
Cma18g00144 397 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 23 389 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00152 Cma18g00144 CCT
Cma13g00908 Cma18g00144 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00144 Cma-Chr18:726434 Cma20g00153 Cma-Chr20:751925 2.18E-11 dispersed
Cma10g00152 Cma-Chr10:697829 Cma18g00144 Cma-Chr18:726434 1.46E-08 wgd
Cma13g00908 Cma-Chr13:7271261 Cma18g00144 Cma-Chr18:726434 4.17E-173 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36741 PF02319 E2F_TDP 5.50E-20 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00144 K09391 - csv:101219210 706.827