Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00149 ATGGCTGCTCGTTTCCTTCTTCTTCTTGGAGTTCTCGCCTTCCTTTGCCTTTCACCGGCAAGCTTTCTTCATGGAGGGTCCGTCGGCTTTGATGGAAACCCCGGAGGGGGAGGAGGAGGAGGAGGGACGGTGAGGAGGCCAAACGAGAGGGTGATGACCAAAATAGACTGTGGATGGGAGTGCAAGCGGCGATGTGGAGCGCACTCGAGGCCGAACCGGTGCTTGAGGGTGTGCGGGACGTGCTGCTTGCGCTGCAACTGCGTGCCGCCGGGGACTTCAGGGAACCGTGAGATGTGCGGCACTTGCTACACCGGCATGACCACGCATGGCAACAAGACCAAGTGCCCTTAA 351 59.54 MAARFLLLLGVLAFLCLSPASFLHGGSVGFDGNPGGGGGGGGTVRRPNERVMTKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTGMTTHGNKTKCP 116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 762977 764145 + CmaCh18G001490.1 Cma18g00149 313487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00149 116 Pfam Gibberellin regulated protein 56 116 IPR003854 -
Cma18g00149 116 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 49 116 - -
Cma18g00149 116 PANTHER GIBBERELLIN-REGULATED PROTEIN 2-RELATED 49 116 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00149 - - - cpep:111802325 211.846
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01971 Cma-Chr1:12708582 Cma18g00149 Cma-Chr18:762977 4.19E-21 dispersed
Cma09g00103 Cma-Chr9:455522 Cma18g00149 Cma-Chr18:762977 2.94E-21 dispersed
Cma15g00033 Cma-Chr15:194643 Cma18g00149 Cma-Chr18:762977 1.32E-17 dispersed
Cma18g00149 Cma-Chr18:762977 Cma05g00155 Cma-Chr5:678036 6.66E-11 dispersed
Cma14g00631 Cma-Chr14:3125222 Cma18g00149 Cma-Chr18:762977 1.58E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g693 . . . . . . . . . Cmo18g00117 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00827 Chy12g01290 Cme12g01716 . . . . . . . . Sed01g1682 . . . Cma18g00149 . Car18g00143 . . Bhi08g01458 Tan05g2037 Cmetu12g1942 . Hepe07g2247 . . Cla01g01393 Cam01g1454 Cec01g1490 . Clacu01g1478 Cmu01g1373 Cre01g1289 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000331 5 7 1 4 7 5 5 5 5 2 4 5 4 4 5 4 5 4 4 5 4 5 5 3 4 3 5 6 8 4 137
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00149 Cma_Chr18 FPKM 0.0 0.0 0.0 0.0 1.379226 0.0 0.784732 0.0 0.0 0.0