Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00161 ATGACAGCCCCTTCTTCCTCCCCATCTTCCTCTGCCTATAAATACAAACCCCTTAAACCATATTCTTCCAACAAGCTTAATAATTTCATGGCGAAGCCCGGCAACAATGGCGGAGCTTCGTTCAAACTCGATCGTAAAACCGTCGAGAAAAACCGAAGAATTCATATGAAATCACTGTGTTCTAAGCTCTTTGATCTTGTTCCTTCCTCCCATTACAAAATTTCTAAGGATTTGCTATCCCAACAGACCCAAATCTCATACGTGATTGCTTACATAAACGAGCTGAAAGAAAGAGTGGAGAGTTTGGAGAAAAGGAAGGAAGCTTTACAATTACAAATTCATTCTCAATTGTCAACTTCTAATGATTCTACATTTCCTATAGTTGAGGTGAAAGAATTGTGTAGTGGGATCGTTCACGTAACGTTGATTAGCAGTGTCCATCGAAACGTCATGCTTAATGAAATCATTGTCGTCATTGAAGAGGAAGGTGGTGAAGTTGTGAGTGCTAGCTTCTCCACGCTCGGTGATAAGATCTTTCATTCCCTCCACATCGAAGCTAAAATTTCTAGAGTTGGAATAGAGACGTCGAGAATAGAAAAAAGATTGGAGAATTTGATAATCGAAGCTCGAGAAGATGGACGAGATAAGGAATCAAAATCATTTCCAAAGTGTTCATCTTATCTTTCTCCTTCAAGTACGAAAACTTGA 708 39.41 MTAPSSSPSSSAYKYKPLKPYSSNKLNNFMAKPGNNGGASFKLDRKTVEKNRRIHMKSLCSKLFDLVPSSHYKISKDLLSQQTQISYVIAYINELKERVESLEKRKEALQLQIHSQLSTSNDSTFPIVEVKELCSGIVHVTLISSVHRNVMLNEIIVVIEEEGGEVVSASFSTLGDKIFHSLHIEAKISRVGIETSRIEKRLENLIIEAREDGRDKESKSFPKCSSYLSPSSTKT 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 815402 816661 - CmaCh18G001610.1 Cma18g00161 313499

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00161 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 116 IPR036638 GO:0046983
Cma18g00161 235 PANTHER OS01G0108400 PROTEIN 121 205 - -
Cma18g00161 235 PANTHER OS01G0108400 PROTEIN 36 116 - -
Cma18g00161 235 Gene3D - 41 123 IPR036638 GO:0046983
Cma18g00161 235 Coils Coil 92 119 - -
Cma18g00161 235 MobiDBLite consensus disorder prediction 213 235 - -
Cma18g00161 235 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 36 116 IPR015660 GO:0003700|GO:0006357
Cma18g00161 235 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 121 205 IPR015660 GO:0003700|GO:0006357
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00161 - - - cmax:111489950 423.705
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00161 Cma-Chr18:815402 Cma18g00373 Cma-Chr18:2027269 4.04E-13 dispersed
Cma18g00161 Cma-Chr18:815402 Cma18g00372 Cma-Chr18:2019299 4.76E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g729 . . . . . Bpe13g00224 Bma06g00229 . . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0110 . . Lsi02g00364 Csa01g00841 Chy12g01276 Cme12g01703 . . Bda11g01637 . . . . . Sed08g2498 . . . Cma18g00161 . Car18g00154 . . Bhi08g01595 Tan05g2021 Cmetu12g1885 Lac10g0437 Hepe07g2234 . . Cla01g01291 Cam01g1438 Cec01g1473 Cco01g1453 Clacu01g1358 Cmu01g1261 Cre01g1272 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010270 3 1 0 2 1 1 1 1 1 2 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00161 Cma_Chr18 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0