Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00163 ATGAGGAATTTGAACTGGTTCAAGCCAATTTCGATCAATGGAAAGCCTGGGAGGAGGCTTTCTCTTGGGGAGTATGAGCGGGCTGTGTCGTGGTCTAAGTATTTGGTGTCGTCTGGTGCAGAGATTAAGGGAGAGGATGAAGAAGAATGGAGTGCGGACATGTCTCAATTGTTTATTGGCTTTAAATTTGCTACAGGAAGGCATAGCAGGATTTACAGAGGTGTGTATAAGCAGAGGGAGGTTGCTATTAAGCTGATAAGCCAGCCTGAGCAGGACGAAAATTTGGCTATCTTTCTTGAGAATCAGTTCATTTCAGAGGTGGCATTGCTGTTTCGATTGAGGCATCCTAATATCATCACTTTCATTGCAGCTTGCAAGAAACCTCCAGTTTTTTGCATCATCACGGAGTACATGTCGGGGGGGTCGTTAAGAAAATACCTCCATCAGCAGGAGCCACATTCTGTTCCACTGAACTTGGTTCTGAAGCTAGCACTCGACATTGCTCGTGGGATGCGGTACCTTCATTCTCAGGGAATACTTCACAGAGATCTCAAATCAGAAAATCTCTTACTTGGTGAAGATATGTGTGTTAAGGTAGCAGATTTCGGTATCTCGTGCCTCGAATCTCAGTGCAGAAGCGCAAAGGGATTCACGGGAACATACCGGTGGATGGCACCCGAAATGATCAAAGAAAAACATCATACAAAAAAGGTTGATGTTTATAGCTTTGGCATTGTCTTGTGGGAGCTCTTAACTGCATTGACACCCTTTGATAACATGACTCCTGAACAAGCAGCATTTGCAGTATGCCAGAAGAATGCAAGACCCCCTCTACCTTCGGCGTGCCCGCAGGCATTTTGTCACATGATCAAGAAATGCTGGTCGAAAAATCCCGACAAGCGACCACATTTTGACGAGATCGTTTCAAATTTGGAAACTTATATGGAGGCTTATAATGAAGATCCAAAATTTTTCTGCCACTATGTGCCCTCATCTAGATATACTACTGCTTTAAAATGCTTACCAAAATTGCAAGTATTTGCCTTACTCGAGGATTTGTTTGAAGCTGTAATCCTTCGGTTCCGCCATTACCGGTGTGTTTCGATCTATGATCAGTTTGGCATGGTGATTTCTAATGTGATTCTGTTCGAAGAAGGTTATTGTTATGGCGTCTCAATCCGGAACTCCTACGATGACGGCTGA 1203 43.89 MRNLNWFKPISINGKPGRRLSLGEYERAVSWSKYLVSSGAEIKGEDEEEWSADMSQLFIGFKFATGRHSRIYRGVYKQREVAIKLISQPEQDENLAIFLENQFISEVALLFRLRHPNIITFIAACKKPPVFCIITEYMSGGSLRKYLHQQEPHSVPLNLVLKLALDIARGMRYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCRSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSACPQAFCHMIKKCWSKNPDKRPHFDEIVSNLETYMEAYNEDPKFFCHYVPSSRYTTALKCLPKLQVFALLEDLFEAVILRFRHYRCVSIYDQFGMVISNVILFEEGYCYGVSIRNSYDDG 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 825651 829733 + CmaCh18G001630.1 Cma18g00163 313501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00163 400 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00163 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Cma18g00163 400 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00163 400 CDD STKc_MAP3K-like 66 311 - -
Cma18g00163 400 Pfam Protein tyrosine and serine/threonine kinase 62 311 IPR001245 GO:0004672|GO:0006468
Cma18g00163 400 PANTHER SERINE-THREONINE PROTEIN KINASE 1 333 - -
Cma18g00163 400 PANTHER SERINE/THREONINE-KINASE HT1-LIKE PROTEIN 1 333 - -
Cma18g00163 400 SUPERFAMILY Protein kinase-like (PK-like) 43 311 IPR011009 -
Cma18g00163 400 Gene3D Phosphorylase Kinase; domain 1 46 139 - -
Cma18g00163 400 Gene3D Transferase(Phosphotransferase) domain 1 140 327 - -
Cma18g00163 400 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Cma18g00163 400 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
Cma18g00163 400 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Cma18g00163 400 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Cma18g00163 400 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00893 Cma18g00163 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00564 Cma-Chr3:5194841 Cma18g00163 Cma-Chr18:825651 1.16E-141 dispersed
Cma07g00340 Cma-Chr7:1466430 Cma18g00163 Cma-Chr18:825651 3.03E-142 dispersed
Cma12g00938 Cma-Chr12:7297489 Cma18g00163 Cma-Chr18:825651 3.28E-99 dispersed
Cma18g00163 Cma-Chr18:825651 Cma18g00374 Cma-Chr18:2041128 8.89E-99 dispersed
Cma13g00893 Cma-Chr13:7203622 Cma18g00163 Cma-Chr18:825651 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69268 PF07714 PK_Tyr_Ser-Thr 7.90E-67 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00163 - - csv:101222762 665.225