Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00167 ATGGGTCTTACTTCTCTTCAAGTCTGCATGGACTCCTCTGATTGGCTACAACAGGGAAGTGGTAACGAGGAGTCAGGCATGGATTGTTCGTCATTATCAGGGGACATGCTGTCATGTTCAAGGCCACTGACAGAGAGGAGGCTGAGGCCTCAACATGACCAAGCACTGAAATGCCCAAGATGTGACTCAACTCATACCAAATTTTGTTACTACAACAACTACAGCCTCTCTCAGCCTCGCTACTTTTGCAAGACTTGTCGTCGGTACTGGACCAAAGGCGGCACTCTCCGCAACATCCCGGTCGGTGGTGGTTGCAGGAAGAACAAGAAAGTTACTACTACTAAGAAATCCAATAATGACCCGATTCATCATCAACAACAACAACCAAGACAACCTATTTCCCAGATCCATCATCATCATATAGCGTCTTCTTCTTCTTCCCTTCATAATCATAATCCCACTGATCTTCATCTCTCGTTTTCAAATCAAGTACACTTCCCCTCTCAGTTCAATCCCCTTATTGGAACACCAAATTTCATCTCAAGCATAGGAATGCTTGAAGCTCACCATCACACCGCTCGACCAATCGACTTCATGGACTCCAAAATGGAAGCCCTTGTTGGCAATGCTCATTACAACCCCACAAACTCCGACCATTTGGCCATGGTGGGTGGGTTTGCTGGAGATCACATTGCCGCTGCTGGCCATGCTCTGTCGCCGAGTTTCCATGGCCTTTGCTCTCCTTATGGACTCTCACTTGATGGGAACGCGGCAGGCATGGGACAAGGAGTGATGATTCCTTATGAACATGAACAAAATGAGGATCCAAATGCAATGGAAGTGAAGCCGAATACAAAGCTTTTGGCTTTGGAATGGCAAGATCAGGAGGGATGTTCTGAGAAAGTTGAGTCCTATGGATTTATAAATGGAATTGGGTCGTCTTGGAATGGGATGATGAATGGATACGGATCATCAACAACGAACCCATTGGTCTAA 996 46.29 MGLTSLQVCMDSSDWLQQGSGNEESGMDCSSLSGDMLSCSRPLTERRLRPQHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVTTTKKSNNDPIHHQQQQPRQPISQIHHHHIASSSSSLHNHNPTDLHLSFSNQVHFPSQFNPLIGTPNFISSIGMLEAHHHTARPIDFMDSKMEALVGNAHYNPTNSDHLAMVGGFAGDHIAAAGHALSPSFHGLCSPYGLSLDGNAAGMGQGVMIPYEHEQNEDPNAMEVKPNTKLLALEWQDQEGCSEKVESYGFINGIGSSWNGMMNGYGSSTTNPLV 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 848291 849890 + CmaCh18G001670.1 Cma18g00167 313505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00167 331 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677|GO:0006355
Cma18g00167 331 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 323 IPR045174 GO:0003700|GO:0006355
Cma18g00167 331 Pfam Dof domain, zinc finger 53 110 IPR003851 GO:0003677|GO:0006355
Cma18g00167 331 MobiDBLite consensus disorder prediction 118 154 - -
Cma18g00167 331 MobiDBLite consensus disorder prediction 107 154 - -
Cma18g00167 331 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677|GO:0006355
Cma18g00167 331 PANTHER DOF ZINC FINGER PROTEIN DOF5.6-LIKE 15 323 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00167 - - - csv:101223232 483.796
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00167 Cma-Chr18:848291 Cma20g00463 Cma-Chr20:2233484 9.11E-39 dispersed
Cma13g00889 Cma-Chr13:7183557 Cma18g00167 Cma-Chr18:848291 4.85E-171 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g742 . . . . . . Bma06g00234 . . . . . . . . Cpe20g00240 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma18g00167 . . . . Bhi08g01605 Tan05g3313 Cmetu12g0829 Lac10g0894 Hepe07g1903 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008227 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 0 3 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36742 PF02701 zf-Dof 1.70E-33 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00167 Cma_Chr18 FPKM 6.626784 9.264847 4.19423 2.417785 15.097145 17.630856 17.398312 0.097088 0.04114 0.0