Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00169 ATGGAAGACCCCAAAACCCCAGAAACCCTAGAAGCTCAAAGCCCTGCGAATGAGATTAGCGAGGATATTTCTGGTTTTTCTGGTTTGGTTGATTTGAGTGGTGGGTTAACTGTGGAGATTCCGGTTGCTGAGAATGCCAATGGCGTAGCGGTTAGTAATGTCGAATTGAGGATTGAGGAGGATGAAATGGGAATTGGCGGTTTAGAGGGAGAAATTTTGGATGCTGGTGGAGATGAAGACGGTGGTGATGGTGGTGGAGCTGAGAATGACCAGAACAATGGCAACGCGGTGGAATTAGACGGTCTTTCTACAGGGAAGAACGTCGAAGTTTCTGGCGATGGTATATCGCTTACAGTGGACGTCTCAAATGTTCAGCCAGGAGAACCAGAGCTTCCCAAGTCAATAGTAATTGAAGAAATTTCGAAAGAAGCTGGAGATGAAAAGCAGGTTATTGAAAATGGTGAAGAGAACAAATTTTCGGTTGGTGATGTAATATGGGTCAAGACCAAAAGTCAGACATGGTGGCCTGGAAAGATACATCCCTCAGATGCAGTAGACAGTGACGCCAGTAGCCAGAGTGACAGTCTTTTAGTTGGCTATTTTGGGAGCAGCCATGTGACATGGTGCTCTACATCTCAGTTGATACCCTTTGCTGAGAACTTTGAGCAGATGTCCGGGAAGTACAAGTCTCGAAGTTTCCTTGGGGCTGTAGAGAAAGCTGTGGATGAGTTTGGTAGGTGTGTGAAGTTGGAGATGACGTGTTCGTGTATTCCTGAAGGAAACCGCCCATTAGAAGGTGATGATGGATCAAAGGATACAACTTCTCTGCCTCGGCGCAAGTCTGGTTTCCTTGCTAAATATTCTGTTGATCAGTATAAACCCGAAACATTCCTAGCACGTGTTAAGGGTCTTGCGCAGATTGTTTCCCTATGTGGAGCACTAGAGTTGAGTATCCTGTATAATCAATTAGCAGCTTTTCAAAGCTCAATAGGGCACCTGCAGTTACCTTTGCATCTGCTCTGGGAAACTCATGATGCTGACGACAATGTGGCGAGCAGATCAGTGAGAAAAAGCAAAACTCGTGTTACAGTGAAAAATGATGAAGAACAGGTAGAAGATGGCACACAGAGCTCACCGTTAGAGACACTGCCCATAGGATCAGACGTTCTACGTGAAACGATGGAGGGAAAGATTGAAGATCCAAATAAGGTACTTGACGGAAGCATGGAAGGGGGGAAAAGGAGCTCCAGAAGAAAGACAATTGCTGATGAAGGAATCGAATCGAGATCGTTAAAGAGAAAAAGAAGTGACAAATTTGAAGATCTTGAATCCAGCAAAATGGATTCTTCAATCAAGGGAGAGGTCATCAATCCATTAGCTTATGAAGGCAAGGATTCTGATGTGGGAGACTTTGATGATGGGAGCAAAGGGATGTCGGAAAAGAGATCGGAGACGAGAGAGAGGAAGAAGAGCAAGTATTTATCTTTTCCATACATAAACTGGGGGCCGAAAAGTATGCCGGCTGACACAGAAGGTATTAAGGCGCTTAAAATTTCTAGCGAAGGTGAGGATGAAAGTGAAGCTGAGGGCAAGAATGAAACCCCTTTACTTTCTAAATGCAGTGGCAAGTTCTGGAAGAAGTGGTACTGGAATATCACCAGTGGCAGTGATGTTGCTGGTAATCAAGAGTTAACGAGTGTTTCGCCAGCTGAGTTTCTTTCTGAGCTTCATTTTACTGCTGTGAATTGTCTTTATCCAAATGAAAGTAATAACTTTGACGCTGTCGCTCAGTTCTTCTCGAGATTTAGAATTCTCACGTTTCATGATGAATCTGTCGATGCTGGTCAAAATGAGGCAAAGACTGCTGAGGTTAAGCATCCTTCTTCTAATGCTAAATCAGGGATCAAGAAAAGAAAAAGTCAGGCAAGTTCTATCTCGGAAATGGAAGAGGTTAAGCATCCTTCTTCGACTGCTGAAATATATCCTGCAGGAGAGGCACAAAAAAAGACCCCTCTGTCTAAAAATGATGGAGAAAGCTTGGGGAGATTGAAGACTAAATCCCTTTCTGCCTTGTCCGATGTGAACATAAACATTTCTTCGAGTAGCCCGCTTACAAAAGACTCACCCGAGATTGGACCTGGACCACTCTCACCCAATGGTTTACCAAAGCGAAGGAAGAGAAAAAACGATGGATCGCTTCTCCAGAGTAAATCAACAACAGAGATACCTGATTTAAATGGAAGTGGTTCGGCACCTGCCTTGTTGGTGGAAGATCAGCGGGCTGCGAGCCAGGTTGCTTCCCAACAAAAGTCTGAGCCAAAGAAGAGAAGGAAACTTGGTGCTGTTAAGGAGCATTCAAAGGTGTCTTCTGAATTCATAGATGCGAATAACAGCAATGAACCTGGTTCCTTTTTCATTGATCTACAGGTCTCAGTTCCACAACCACTTGGTGTGATTTCAGAGAAAAATAAAGTGGATTTTGAAGGAGCGCCTAACCAGTCGGTGGAGGAGCAGACAATTGCCCAGGATCAGAGCAAGTCTGGGGTCAAAAGCCGAAAGAAGAAGGAGAAACCGCCATTGACAGATCCGAAGGTAATCTTGCCTTCTGATATACCAGATTTAAATGGAATGGGTATTGAATCTAGTCAGGGGAAAGACTCCCAGTTGACTAAACCAAAGAGGAGGAGGAGGAGAAAAGGTGAAGCTAGTTTGAACCATCCGAGTCCTTCTGACAAACAATATATCTATAATAAAGTTGAAACTGATGGTGATGGATTAGGATCTCTTCTTCTCTTGACTTTCTCTTCAGAAGCTCCCTTACCGCCCCGGCAGCAAGTTATCACAACGTTTAGCCAGTTCGGATCTTTGAAGGAATCCGAGATACAGTTGAAAGATTCAACTGTTGAGATAGTTTTCATTCGAAGTGCTGATGCGATGGAAGCAGTTCGGAGTTTAAAGAAGAACAACATTTTTGGCCCAACTCTTTTAAAATACCAGCTCTATCACCTCTCAACTCCCCCGAAGACGTCGGACGTGGACAGGGCTTGCACAGCACTGGCCTATCCAGCATCTGAGGGCACTCTCAACTCATCAAAGTCTGCTGAATCAGGGTCTCAATCAGCAGGTGAGGCACAGCCTGTCGAGTTTATTAGGAAGAATCTTCAGATGATGACATCAATGCTGGAGAAGTCCGGAGACAATCTCTCCCCAGACACGAGAGCCAAATTGGAGAGCGATATTGAAGTCCTCCTCAAGAAGGTGAGTTCCATGGCGGGTTCTTCCTCAACGTAA 3291 44.67 MEDPKTPETLEAQSPANEISEDISGFSGLVDLSGGLTVEIPVAENANGVAVSNVELRIEEDEMGIGGLEGEILDAGGDEDGGDGGGAENDQNNGNAVELDGLSTGKNVEVSGDGISLTVDVSNVQPGEPELPKSIVIEEISKEAGDEKQVIENGEENKFSVGDVIWVKTKSQTWWPGKIHPSDAVDSDASSQSDSLLVGYFGSSHVTWCSTSQLIPFAENFEQMSGKYKSRSFLGAVEKAVDEFGRCVKLEMTCSCIPEGNRPLEGDDGSKDTTSLPRRKSGFLAKYSVDQYKPETFLARVKGLAQIVSLCGALELSILYNQLAAFQSSIGHLQLPLHLLWETHDADDNVASRSVRKSKTRVTVKNDEEQVEDGTQSSPLETLPIGSDVLRETMEGKIEDPNKVLDGSMEGGKRSSRRKTIADEGIESRSLKRKRSDKFEDLESSKMDSSIKGEVINPLAYEGKDSDVGDFDDGSKGMSEKRSETRERKKSKYLSFPYINWGPKSMPADTEGIKALKISSEGEDESEAEGKNETPLLSKCSGKFWKKWYWNITSGSDVAGNQELTSVSPAEFLSELHFTAVNCLYPNESNNFDAVAQFFSRFRILTFHDESVDAGQNEAKTAEVKHPSSNAKSGIKKRKSQASSISEMEEVKHPSSTAEIYPAGEAQKKTPLSKNDGESLGRLKTKSLSALSDVNINISSSSPLTKDSPEIGPGPLSPNGLPKRRKRKNDGSLLQSKSTTEIPDLNGSGSAPALLVEDQRAASQVASQQKSEPKKRRKLGAVKEHSKVSSEFIDANNSNEPGSFFIDLQVSVPQPLGVISEKNKVDFEGAPNQSVEEQTIAQDQSKSGVKSRKKKEKPPLTDPKVILPSDIPDLNGMGIESSQGKDSQLTKPKRRRRRKGEASLNHPSPSDKQYIYNKVETDGDGLGSLLLLTFSSEAPLPPRQQVITTFSQFGSLKESEIQLKDSTVEIVFIRSADAMEAVRSLKKNNIFGPTLLKYQLYHLSTPPKTSDVDRACTALAYPASEGTLNSSKSAESGSQSAGEAQPVEFIRKNLQMMTSMLEKSGDNLSPDTRAKLESDIEVLLKKVSSMAGSSST 1096
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 851404 854694 - CmaCh18G001690.1 Cma18g00169 313507

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00169 1096 MobiDBLite consensus disorder prediction 617 681 - -
Cma18g00169 1096 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 47 1095 - -
Cma18g00169 1096 MobiDBLite consensus disorder prediction 832 846 - -
Cma18g00169 1096 SUPERFAMILY Tudor/PWWP/MBT 155 259 - -
Cma18g00169 1096 MobiDBLite consensus disorder prediction 465 486 - -
Cma18g00169 1096 MobiDBLite consensus disorder prediction 770 790 - -
Cma18g00169 1096 ProSiteProfiles PWWP domain profile. 161 220 IPR000313 -
Cma18g00169 1096 MobiDBLite consensus disorder prediction 462 486 - -
Cma18g00169 1096 Pfam PWWP domain 162 243 IPR000313 -
Cma18g00169 1096 MobiDBLite consensus disorder prediction 847 861 - -
Cma18g00169 1096 MobiDBLite consensus disorder prediction 622 651 - -
Cma18g00169 1096 SMART PWWP_4 159 218 IPR000313 -
Cma18g00169 1096 MobiDBLite consensus disorder prediction 400 448 - -
Cma18g00169 1096 MobiDBLite consensus disorder prediction 364 383 - -
Cma18g00169 1096 MobiDBLite consensus disorder prediction 1026 1046 - -
Cma18g00169 1096 MobiDBLite consensus disorder prediction 73 96 - -
Cma18g00169 1096 MobiDBLite consensus disorder prediction 829 913 - -
Cma18g00169 1096 MobiDBLite consensus disorder prediction 696 800 - -
Cma18g00169 1096 MobiDBLite consensus disorder prediction 1 21 - -
Cma18g00169 1096 MobiDBLite consensus disorder prediction 1026 1043 - -
Cma18g00169 1096 Gene3D - 148 252 - -
Cma18g00169 1096 PANTHER ALDOLASE-RELATED 47 1095 - -
Cma18g00169 1096 Coils Coil 137 157 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00169 - - - cmax:111490244 2028.83
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00888 Cma18g00169 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01282 Cma-Chr14:10135848 Cma18g00169 Cma-Chr18:851404 1.50E-14 dispersed
Cma13g00888 Cma-Chr13:7177987 Cma18g00169 Cma-Chr18:851404 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g756 Blo04g00735 . Bda06g00598 . . Bpe13g00240 Bma06g00220 Bma12g01038 Cmo13g00917 . . . . . . Cpe20g00243 . . . . . . . . . . . . . . . . . . . . Csa01g00850 . Cme12g01695 . . Bda11g01653 . Bpe07g00839 Bpe15g00637 Bma03g00782 . . . . Cma13g00888 Cma18g00169 Car13g00728 Car18g00160 Cpe09g01026 . Bhi08g01607 Tan05g2010 . Lac10g0448 . . . Cla01g01299 Cam01g1430 Cec01g1465 . Clacu01g1365 Cmu01g1271 Cre01g1265 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004937 3 2 2 3 3 1 2 0 1 0 1 1 2 1 1 1 2 0 2 1 1 1 1 1 1 0 2 2 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00169 Cma_Chr18 FPKM 15.060164 18.971968 21.139568 22.692091 23.269749 22.294737 24.453682 17.022104 17.004421 16.066345